R help - Oct 2009 - Warning messages: Reached total allocation of 1023Mb: see help(memory.size)

Hi there,

I run the following code in R and got the warning like that, how can I
change the memory.size? Or anything else? Thanks a lot!

Faye

temp<-apply(Idd4.perms$permstats[-stratum1,],
+ 2,sort)
Error: cannot allocate vector of size 47.5 Mb
In addition: Warning messages:
1: In apply(Idd4.perms$permstats[-stratum1, ], 2, sort) :
  Reached total allocation of 1023Mb: see help(memory.size)
2: In apply(Idd4.perms$permstats[-stratum1, ], 2, sort) :
  Reached total allocation of 1023Mb: see help(memory.size)
3: In unlist(ans, recursive = FALSE) :
  Reached total allocation of 1023Mb: see help(memory.size)
4: In unlist(ans, recursive = FALSE) :
  Reached total allocation of 1023Mb: see help(memory.size)
5: In unlist(ans, recursive = FALSE) :
  Reached total allocation of 1023Mb: see help(memory.size)
6: In unlist(ans, recursive = FALSE) :
  Reached total allocation of 1023Mb: see
help(memory.size)
> 
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Hi,

On Oct 15, 2009, at 1:06 PM, Fayanna wrote:
> Hi there,
>
> I run the following code in R and got the warning like that, how can I
> change the memory.size? Or anything else? Thanks a lot!
You haven't told us what type of machine you're on, or how much ram  
you have (it might very well be that you don't have enough ram on your  
system to load the data you're trying to load, no?)

Anyway, still .. I'm guessing that:
1. You're on windows; and
2. You're stuck in 32bit land?

Look through these:

http://www.nabble.com/forum/Search.jtp?forum=13820&local=y&query=windows+memory

Hope that helps,
-steve
>
> Faye
>
> temp<-apply(Idd4.perms$permstats[-stratum1,],
> + 2,sort)
> Error: cannot allocate vector of size 47.5 Mb
> In addition: Warning messages:
> 1: In apply(Idd4.perms$permstats[-stratum1, ], 2, sort) :
>  Reached total allocation of 1023Mb: see help(memory.size)
> 2: In apply(Idd4.perms$permstats[-stratum1, ], 2, sort) :
>  Reached total allocation of 1023Mb: see help(memory.size)
> 3: In unlist(ans, recursive = FALSE) :
>  Reached total allocation of 1023Mb: see help(memory.size)
> 4: In unlist(ans, recursive = FALSE) :
>  Reached total allocation of 1023Mb: see help(memory.size)
> 5: In unlist(ans, recursive = FALSE) :
>  Reached total allocation of 1023Mb: see help(memory.size)
> 6: In unlist(ans, recursive = FALSE) :
>  Reached total allocation of 1023Mb: see help(memory.size)
>>
> -- 
> View this message in context:
http://www.nabble.com/Warning-messages%3A---Reached-total-allocation-of-1023Mb%3A-see-help%28memory.size%29-tp25912413p25912413.html
> Sent from the R help mailing list archive at Nabble.com.
>
> ______________________________________________
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> PLEASE do read the posting guide
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--
Steve Lianoglou
Graduate Student: Computational Systems Biology
   |  Memorial Sloan-Kettering Cancer Center
   |  Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact