Maxime Pauwels
2009-Oct-15 15:34 UTC
[R] changing a matrix from class data.frame to class dist
Dear, I have a data frame object (FSTc) which is in fact a matrix of class data.frame but created from a txt file using the command FSTc<-read.table("FSTcmatrix.txt", header=T) I would like to transform it in a distance matrix of class dist to use it with the ade4 package. I'm quite sure this is a simple operation but i just don't have the commands. Could anyone help? Thank you Maxime -- Maxime Pauwels Researcher ID: http://www.researcherid.com/rid/A-1745-2009 Laboratoire de G?n?tique et Evolution des Populations V?g?tales UMR CNRS 8016 Universit? de Lille, USTL-Lille1 http://gepv.univ-lille1.fr Tel : +33 3 20 43 40 76 Fax : +33 3 20 43 69 79 ?Impose ta chance, serre ton bonheur et va vers ton risque. A te regarder, ils s?habitueront.? Ren? Char
David Winsemius
2009-Oct-15 16:27 UTC
[R] changing a matrix from class data.frame to class dist
On Oct 15, 2009, at 11:34 AM, Maxime Pauwels wrote:> Dear, > > I have a data frame object (FSTc) which is in fact a matrix of class > data.frameNot sure that is possible (in R terminology anyway.). Dataframes are lists.> but created from a txt file using the command > FSTc<-read.table("FSTcmatrix.txt", header=T) > > I would like to transform it in a distance matrix of class dist to > use it with the ade4 package. > > I'm quite sure this is a simple operation but i just don't have the > commands.?dist #which points to ?as.dist # which is a coercion function -- David Winsemius, MD Heritage Laboratories West Hartford, CT
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