Gundala Viswanath
2009-Sep-02 10:10 UTC
[R] Howto Superimpose Multiple Density Curves Into One Plot
I have a data that looks like this: http://dpaste.com/88561/plain/ And I intend to create multiple density curve into one plot, where each curve correspond to the unique ID. I tried to use "sm" package, with this code, but without success. __BEGIN__ library(sm) dat <- read.table("mydat.txt"); plotfn <- ("~/Desktop/flowgram_superimposed.pdf"); pdf(plotfn); sm.density.compare(dat$V1,dat$V2, xlab = "Flow Signal") colfill <- c(2:10); legend(locator(1), levels(dat$V2), fill=colfill) dev.off(); __END__ Please advice what's the right way to do it or if there is alternative way to do it? I am trying to get this kind of figure: http://img524.imageshack.us/img524/2736/testl.png - G.V.
ONKELINX, Thierry
2009-Sep-02 11:30 UTC
[R] Howto Superimpose Multiple Density Curves Into One Plot
Have a look at the ggplot2 package. library(ggplot2) dat <- read.table("mydat.txt") ggplot(dat, aes(x = V1, colour = factor(V2))) + geom_density() #or a few alternatives ggplot(dat, aes(x = V1, fill = factor(V2))) + geom_density(alpha = 0.2) ggplot(dat, aes(x = V1)) + geom_density() + facet_wrap(~V2) HTH, Thierry ------------------------------------------------------------------------ ---- ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest Cel biometrie, methodologie en kwaliteitszorg / Section biometrics, methodology and quality assurance Gaverstraat 4 9500 Geraardsbergen Belgium tel. + 32 54/436 185 Thierry.Onkelinx at inbo.be www.inbo.be To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey -----Oorspronkelijk bericht----- Van: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org] Namens Gundala Viswanath Verzonden: woensdag 2 september 2009 12:10 Aan: r-help at stat.math.ethz.ch Onderwerp: [R] Howto Superimpose Multiple Density Curves Into One Plot I have a data that looks like this: http://dpaste.com/88561/plain/ And I intend to create multiple density curve into one plot, where each curve correspond to the unique ID. I tried to use "sm" package, with this code, but without success. __BEGIN__ library(sm) dat <- read.table("mydat.txt"); plotfn <- ("~/Desktop/flowgram_superimposed.pdf"); pdf(plotfn); sm.density.compare(dat$V1,dat$V2, xlab = "Flow Signal") colfill <- c(2:10); legend(locator(1), levels(dat$V2), fill=colfill) dev.off(); __END__ Please advice what's the right way to do it or if there is alternative way to do it? I am trying to get this kind of figure: http://img524.imageshack.us/img524/2736/testl.png - G.V. ______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Druk dit bericht a.u.b. niet onnodig af. Please do not print this message unnecessarily. Dit bericht en eventuele bijlagen geven enkel de visie van de schrijver weer en binden het INBO onder geen enkel beding, zolang dit bericht niet bevestigd is door een geldig ondertekend document. The views expressed in this message and any annex are purely those of the writer and may not be regarded as stating an official position of INBO, as long as the message is not confirmed by a duly signed document.