Mao Jianfeng
2009-Aug-21 12:14 UTC
[R] how to plot 95% confidential interval as vertical lines to x axe in density plot
Dear R-help listers, Under the helps from the ggplot2 list, I have set up method of drawing a graph with multiple density plots arranged one by one in one page. Now, I want to add 95% confidential interval as vertical lines to x axe in density plot. I have found the library(hdrcde) can do this work, but I do not know how to handle functions of this library when I used ggplot2 to draw the graph. Thank you in advance. The data and codes followed: # dummy data factor<-rep(c("Alice","Jone","Mike"),each=100) factor<-factor(factor) traits1<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits2<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits3<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits4<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits5<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits6<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits7<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits8<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits9<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits10<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits11<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits12<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits13<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits14<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits15<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits16<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits17<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits18<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits19<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits20<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) traits21<-c(rnorm(100, mean=1, sd=1), rnorm(100, mean=3, sd=3), rnorm(100, mean=6, sd=6)) myda<-data.frame(factor,traits1,traits2,traits3,traits4,traits5,traits6,traits7,traits8,traits9,traits10,traits11,traits12,traits13,traits14,traits15,traits16,traits17,traits18, traits19,traits20,traits21) library(ggplot2) d = melt(myda, id = "factor") str(d) pdf("test33.pdf") p ggplot(data=d, mapping=aes(x=value, y=..density..)) + facet_wrap(~variable)+ stat_density(aes(fill=factor), alpha=0.5, col=NA, position = 'identity') + stat_density(aes(colour = factor), geom="path", position = 'identity') print(p) dev.off() Mao J-F
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