R help - Jun 2009 - overshoot of formula line in summary output of Sweave

Hi,

In the Sweave output for summary for several types
of model objects and also for the comparison of models
with anova, I find that that the display of the call(s)
or formula does not obey the width option, even with
keep.source=TRUE set, so that a long formula will overshoot
the margins in the document.  I would like to know if
there is a good way to correct that.  Looking at the
print.summary methods for lm, glm and several others,
I see that a construct like deparse(obj$call) is used
to generate the text.  The deparse function takes a
"width.cutoff" argument, that could be used in these cases,
if it were possible to pass a value to it, or if its default
value could be set with an option.  Other methods do not
use deparse, (print.summary.polr in MASS uses dput and
anovalist.nls also does it differently) so such a solution
would not work universally without altering these functions.

Here is a toy example that illustrates the overshoot of the formula

\documentclass[12pt]{article}
\usepackage{geometry}
\geometry{left=2in,right=2in}
\begin{document}
<<keep.source=TRUE>>op <- options(width = 65, digits = 3)
ddataframe <- data.frame(AAAAA = 1:10,
	BBBBB = factor(letters[1:2]),
	CCCCC = factor(LETTERS[1:5]),
	SSSSS = factor(paste("S", 1:10, sep = "")),
	RRRRR = rnorm(10))

mod1 <- lm(RRRRR ~ AAAAA + BBBBB + CCCCC + SSSSS,
	ddataframe)
summary(mod1)
@
\end{document}

I have attached the pdf output.

Thanks, in advance, for any suggestions.

Ken

-- 
Ken Knoblauch
Inserm U846
Stem-cell and Brain Research Institute
Department of Integrative Neurosciences
18 avenue du Doyen L?pine
69500 Bron
France
tel: +33 (0)4 72 91 34 77
fax: +33 (0)4 72 91 34 61
portable: +33 (0)6 84 10 64 10
http://www.sbri.fr/members/kenneth-knoblauch.html

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Ken Knoblauch wrote:
> 
> Hi,
> 
> In the Sweave output for summary for several types
> of model objects and also for the comparison of models
> with anova, I find that that the display of the call(s)
> or formula does not obey the width option, even with
> keep.source=TRUE set, so that a long formula will overshoot
> the margins in the document.  I would like to know if
> there is a good way to correct that.  Looking at the
> print.summary methods for lm, glm and several others,
> I see that a construct like deparse(obj$call) is used
> to generate the text.  The deparse function takes a
> "width.cutoff" argument, that could be used in these cases,
> if it were possible to pass a value to it, or if its default
> value could be set with an option.  Other methods do not
> use deparse, (print.summary.polr in MASS uses dput and
> anovalist.nls also does it differently) so such a solution
> would not work universally without altering these functions.
> 
> Here is a toy example that illustrates the overshoot of the formula
> 
> \documentclass[12pt]{article}
> \usepackage{geometry}
> \geometry{left=2in,right=2in}
> \begin{document}
> <<keep.source=TRUE>>> op <- options(width = 65, digits =
3)
> ddataframe <- data.frame(AAAAA = 1:10,
> 	BBBBB = factor(letters[1:2]),
> 	CCCCC = factor(LETTERS[1:5]),
> 	SSSSS = factor(paste("S", 1:10, sep = "")),
> 	RRRRR = rnorm(10))
> 
> mod1 <- lm(RRRRR ~ AAAAA + BBBBB + CCCCC + SSSSS,
> 	ddataframe)
> summary(mod1)
> @
> \end{document}
> 
> I have attached the pdf output.
> 
> Thanks, in advance, for any suggestions.
> 
> Ken
> 
> 
> 
A quick guess:  try keep.source=TRUE and format your commands
as you would like to see them appear ...

  Ben Bolker

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