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Mao Jianfeng

2009-Apr-09 11:19 UTC

[R] failed when merging two dataframes, why

Hi, R-listers,

Failed, when I tried to merge df1 and df2 by "codetot" in df1 and
"codetoto"
in df2. I want to know the reason and how to merge them together. Data
frames and codes I have used were listed as followed. Thanks a lot in
advance.

df1:
popcode     codetot   p3need
BCPy01-01 BCPy01-01-1 100.0000
BCPy01-01 BCPy01-01-2 100.0000
BCPy01-01 BCPy01-01-3 100.0000
BCPy01-02 BCPy01-02-1  92.5926
BCPy01-02 BCPy01-02-1 100.0000
BCPy01-02 BCPy01-02-2  92.5926
BCPy01-02 BCPy01-02-2 100.0000
BCPy01-02 BCPy01-02-3  92.5926
BCPy01-02 BCPy01-02-3 100.0000
BCPy01-03 BCPy01-03-1 100.0000

df2:
popcode    codetoto   areasec
BCPy01-01 BCPy01-01-1 0.5089434
BCPy01-01 BCPy01-01-2 0.6246381
BCPy01-01 BCPy01-01-3 0.4370059
BCPy01-02 BCPy01-02-1 0.9253052
BCPy01-02 BCPy01-02-1 0.6011810
BCPy01-02 BCPy01-02-2 0.6710850
BCPy01-02 BCPy01-02-2 0.7145839
BCPy01-02 BCPy01-02-3 0.9515256
BCPy01-02 BCPy01-02-3 0.6555006
BCPy01-03 BCPy01-03-1 0.8683875

code:
new1<-merge(df1,df2,by=c("popcode","popcode"),all=T) # It
is processed well.
But, it is not what I want.
new2<-merge(df1,df2,by=c("codetot","codetoto"),all=T) #
this one failed. I
exactly want to do that.

Mao J-F
IBCAS, AC

	[[alternative HTML version deleted]]

jim holtman

2009-Apr-09 11:40 UTC

head link

[R] failed when merging two dataframes, why

try this:
> merge(df1, df2, by.x='codetot',by.y='codetoto', all=TRUE)       codetot popcode.x   p3need popcode.y   areasec
1  BCPy01-01-1 BCPy01-01 100.0000 BCPy01-01 0.5089434
2  BCPy01-01-2 BCPy01-01 100.0000 BCPy01-01 0.6246381
3  BCPy01-01-3 BCPy01-01 100.0000 BCPy01-01 0.4370059
4  BCPy01-02-1 BCPy01-02  92.5926 BCPy01-02 0.9253052
5  BCPy01-02-1 BCPy01-02  92.5926 BCPy01-02 0.6011810
6  BCPy01-02-1 BCPy01-02 100.0000 BCPy01-02 0.9253052
7  BCPy01-02-1 BCPy01-02 100.0000 BCPy01-02 0.6011810
8  BCPy01-02-2 BCPy01-02  92.5926 BCPy01-02 0.6710850
9  BCPy01-02-2 BCPy01-02  92.5926 BCPy01-02 0.7145839
10 BCPy01-02-2 BCPy01-02 100.0000 BCPy01-02 0.6710850
11 BCPy01-02-2 BCPy01-02 100.0000 BCPy01-02 0.7145839
12 BCPy01-02-3 BCPy01-02  92.5926 BCPy01-02 0.9515256
13 BCPy01-02-3 BCPy01-02  92.5926 BCPy01-02 0.6555006
14 BCPy01-02-3 BCPy01-02 100.0000 BCPy01-02 0.9515256
15 BCPy01-02-3 BCPy01-02 100.0000 BCPy01-02 0.6555006
16 BCPy01-03-1 BCPy01-03 100.0000 BCPy01-03 0.8683875>

On Thu, Apr 9, 2009 at 7:19 AM, Mao Jianfeng <jianfeng.mao at gmail.com>
wrote:> Hi, R-listers,
>
> Failed, when I tried to merge df1 and df2 by "codetot" in df1 and
"codetoto"
> in df2. I want to know the reason and how to merge them together. Data
> frames and codes I have used were listed as followed. Thanks a lot in
> advance.
>
> df1:
> popcode ? ? codetot ? p3need
> BCPy01-01 BCPy01-01-1 100.0000
> BCPy01-01 BCPy01-01-2 100.0000
> BCPy01-01 BCPy01-01-3 100.0000
> BCPy01-02 BCPy01-02-1 ?92.5926
> BCPy01-02 BCPy01-02-1 100.0000
> BCPy01-02 BCPy01-02-2 ?92.5926
> BCPy01-02 BCPy01-02-2 100.0000
> BCPy01-02 BCPy01-02-3 ?92.5926
> BCPy01-02 BCPy01-02-3 100.0000
> BCPy01-03 BCPy01-03-1 100.0000
>
> df2:
> popcode ? ?codetoto ? areasec
> BCPy01-01 BCPy01-01-1 0.5089434
> BCPy01-01 BCPy01-01-2 0.6246381
> BCPy01-01 BCPy01-01-3 0.4370059
> BCPy01-02 BCPy01-02-1 0.9253052
> BCPy01-02 BCPy01-02-1 0.6011810
> BCPy01-02 BCPy01-02-2 0.6710850
> BCPy01-02 BCPy01-02-2 0.7145839
> BCPy01-02 BCPy01-02-3 0.9515256
> BCPy01-02 BCPy01-02-3 0.6555006
> BCPy01-03 BCPy01-03-1 0.8683875
>
> code:
> new1<-merge(df1,df2,by=c("popcode","popcode"),all=T)
# It is processed well.
> But, it is not what I want.
>
new2<-merge(df1,df2,by=c("codetot","codetoto"),all=T) #
this one failed. I
> exactly want to do that.
>
> Mao J-F
> IBCAS, AC
>
> ? ? ? ?[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>


-- 
Jim Holtman
Cincinnati, OH
+1 513 646 9390

What is the problem that you are trying to solve?

Jun Shen

2009-Apr-09 14:16 UTC

head link

[R] failed when merging two dataframes, why

I would suggest use the same column names for the common columns. Say, use
"codetot" for both df1 and df2. Then you don't even have to
specify by.x or
by.y, merge will do it automatically.

merge(df1,df2, all=TRUE).
Otherwise you have to
merge(df1,df2,by.x=c('popcode','codetot'),by.y=c('popcode','codetoto'),all=TRUE)

They both produce

     popcode     codetot   p3need   areasec
1  BCPy01-01 BCPy01-01-1      100 0.5089434
2  BCPy01-01 BCPy01-01-2      100 0.6246381
3  BCPy01-01 BCPy01-01-3      100 0.4370059
4  BCPy01-02 BCPy01-02-1  92.5926 0.9253052
5  BCPy01-02 BCPy01-02-1  92.5926 0.6011810
6  BCPy01-02 BCPy01-02-1      100 0.9253052
7  BCPy01-02 BCPy01-02-1      100 0.6011810
8  BCPy01-02 BCPy01-02-2  92.5926 0.6710850
9  BCPy01-02 BCPy01-02-2  92.5926 0.7145839
10 BCPy01-02 BCPy01-02-2      100 0.6710850
11 BCPy01-02 BCPy01-02-2      100 0.7145839
12 BCPy01-02 BCPy01-02-3  92.5926 0.9515256
13 BCPy01-02 BCPy01-02-3  92.5926 0.6555006
14 BCPy01-02 BCPy01-02-3      100 0.9515256
15 BCPy01-02 BCPy01-02-3      100 0.6555006
16 BCPy01-03 BCPy01-03-1      100 0.8683875


On Thu, Apr 9, 2009 at 6:19 AM, Mao Jianfeng <jianfeng.mao@gmail.com>
wrote:
> Hi, R-listers,
>
> Failed, when I tried to merge df1 and df2 by "codetot" in df1 and
> "codetoto"
> in df2. I want to know the reason and how to merge them together. Data
> frames and codes I have used were listed as followed. Thanks a lot in
> advance.
>
> df1:
> popcode     codetot   p3need
> BCPy01-01 BCPy01-01-1 100.0000
> BCPy01-01 BCPy01-01-2 100.0000
> BCPy01-01 BCPy01-01-3 100.0000
> BCPy01-02 BCPy01-02-1  92.5926
> BCPy01-02 BCPy01-02-1 100.0000
> BCPy01-02 BCPy01-02-2  92.5926
> BCPy01-02 BCPy01-02-2 100.0000
> BCPy01-02 BCPy01-02-3  92.5926
> BCPy01-02 BCPy01-02-3 100.0000
> BCPy01-03 BCPy01-03-1 100.0000
>
> df2:
> popcode    codetoto   areasec
> BCPy01-01 BCPy01-01-1 0.5089434
> BCPy01-01 BCPy01-01-2 0.6246381
> BCPy01-01 BCPy01-01-3 0.4370059
> BCPy01-02 BCPy01-02-1 0.9253052
> BCPy01-02 BCPy01-02-1 0.6011810
> BCPy01-02 BCPy01-02-2 0.6710850
> BCPy01-02 BCPy01-02-2 0.7145839
> BCPy01-02 BCPy01-02-3 0.9515256
> BCPy01-02 BCPy01-02-3 0.6555006
> BCPy01-03 BCPy01-03-1 0.8683875
>
> code:
> new1<-merge(df1,df2,by=c("popcode","popcode"),all=T)
# It is processed
> well.
> But, it is not what I want.
>
new2<-merge(df1,df2,by=c("codetot","codetoto"),all=T) #
this one failed. I
> exactly want to do that.
>
> Mao J-F
> IBCAS, AC
>
>        [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>


-- 
Jun Shen PhD
PK/PD Scientist
BioPharma Services
Millipore Corporation
15 Research Park Dr.
St Charles, MO 63304
Direct: 636-720-1589

	[[alternative HTML version deleted]]

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