Hi, I am trying to compile the R-dev version on a unix Suse machine and got errors. Would someone be able to help me determine what to do to fix these errors: make[1]: Entering directory `/lustre/people/schaffer/R-devel/m4' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/lustre/people/schaffer/R-devel/m4' make[1]: Entering directory `/lustre/people/schaffer/R-devel/tools' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/lustre/people/schaffer/R-devel/tools' make[1]: Entering directory `/lustre/people/schaffer/R-devel/doc' make[2]: Entering directory `/lustre/people/schaffer/R-devel/doc/html' make[3]: Entering directory `/lustre/people/schaffer/R-devel/doc/html/search' make[3]: Leaving directory `/lustre/people/schaffer/R-devel/doc/html/search' make[2]: Leaving directory `/lustre/people/schaffer/R-devel/doc/html' make[2]: Entering directory `/lustre/people/schaffer/R-devel/doc/manual' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/lustre/people/schaffer/R-devel/doc/manual' make[1]: Leaving directory `/lustre/people/schaffer/R-devel/doc' make[1]: Entering directory `/lustre/people/schaffer/R-devel/etc' make[1]: Leaving directory `/lustre/people/schaffer/R-devel/etc' make[1]: Entering directory `/lustre/people/schaffer/R-devel/share' make[1]: Leaving directory `/lustre/people/schaffer/R-devel/share' make[1]: Entering directory `/lustre/people/schaffer/R-devel/src' make[2]: Entering directory `/lustre/people/schaffer/R-devel/src/scripts' creating src/scripts/R.fe make[3]: Entering directory `/lustre/people/schaffer/R-devel/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory `/lustre/people/schaffer/R-devel/src/scripts' make[2]: Leaving directory `/lustre/people/schaffer/R-devel/src/scripts' make[2]: Entering directory `/lustre/people/schaffer/R-devel/src/include' mkdir -p -- ../../include cp: getting attribute `trusted.lov' of `Rmath.h0': Operation not permitted make[2]: *** [Rmath.h] Error 1 make[2]: Leaving directory `/lustre/people/schaffer/R-devel/src/include' make[1]: *** [R] Error 1 make[1]: Leaving directory `/lustre/people/schaffer/R-devel/src' make: *** [R] Error 1 Lana Schaffer Biostatistics/Informatics The Scripps Research Institute DNA Array Core Facility La Jolla, CA 92037 (858) 784-2263 (858) 784-2994 schaffer at scripps.edu
Lana Schaffer wrote:> Hi, > I am trying to compile the R-dev version on a unix Suse machine > and got errors. > Would someone be able to help me determine what to do to fix > these errors:.....> make[2]: Entering directory > `/lustre/people/schaffer/R-devel/src/include' > mkdir -p -- ../../include > cp: getting attribute `trusted.lov' of `Rmath.h0': Operation not > permittedA Valentines Day bug? (Fiancee not Faithful) :-) Seriously, this looks like it could be related to http://osdir.com/ml/file-systems.lustre.user/2007/msg01107.html If so, then it is probably something very specific to SLES and the Lustre file system, and you need to use their support. You could try building in a separate directory though (mkdir ../BUILD ; cd ../BUILD ; ../R/configure && make).> make[2]: *** [Rmath.h] Error 1 > make[2]: Leaving directory `/lustre/people/schaffer/R-devel/src/include' > make[1]: *** [R] Error 1 > make[1]: Leaving directory `/lustre/people/schaffer/R-devel/src' > make: *** [R] Error 1 > > > > > Lana Schaffer > Biostatistics/Informatics > The Scripps Research Institute > DNA Array Core Facility > La Jolla, CA 92037 > (858) 784-2263 > (858) 784-2994 > schaffer at scripps.edu > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.-- O__ ---- Peter Dalgaard ?ster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907