R help - Sep 2008 - subscript out of bounds

I'm working on Human Exon Array 1.0 ST.  I'm getting normalized data  
fine but I'm running into problems with QC.   QCReport gives me the  
following error:

 > load(file= "huex10stv2cdf.rda")
 > exon.data at cdfName <- "huex10stv2cdf"
 > QCReport(exon.data, file = "QCReport.pdf")
Error in as.vector(ans[[i]][, i.probes]) : subscript out of bounds

Your insight is very much appreciated!!

Dorothy

Hi

r-help-bounces at r-project.org napsal dne 11.09.2008 19:11:55:
> I'm working on Human Exon Array 1.0 ST.  I'm getting normalized
data
> fine but I'm running into problems with QC.   QCReport gives me the 
> following error:
> 
>  > load(file= "huex10stv2cdf.rda")
>  > exon.data at cdfName <- "huex10stv2cdf"
>  > QCReport(exon.data, file = "QCReport.pdf")
> Error in as.vector(ans[[i]][, i.probes]) : subscript out of bounds
It is probably specific to Bioconductor so their help list would be more 
appropriate. My wild shot is that QCReport does not like your exon.data 
file or at least something in it.

You can use str(exon.data) for looking to it and compare the structure 
with required.

Regards
Petr
> 
> Your insight is very much appreciated!!
> 
> Dorothy
> 
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