R help - Jun 2008 - Problem when combining dotplot() and textplot() using grid

Hi everyone.

I want to solve the following problem. I have a data.frame and I
create a dotplot using lattice.

Then I want to use the grid-package to create a combined graphic which
contains the dotplot as well as a textplot() (using package gplots) of
the data.frame next to the dotplot.

Example code:
library(lattice)
library(grid)
library(gplots)

xx <- data.frame(f=factor(rep(1:5, each=5)), gr= rep(c("gr1",
"gr2",
"gr3", "gr4", "gr5"), 5), val=rnorm(25))
grid.newpage()
pushViewport(viewport(layout = grid.layout(1, 2)))
pushViewport(viewport(layout.pos.col=1, layout.pos.row=1))
    p <- dotplot(f ~ val, groups=gr, xx, cex=1.7, pch=20)
    print(p, newpage=FALSE)
popViewport(1)

pushViewport(viewport(layout.pos.col=2, layout.pos.row=1))
    textplot(xx, show.rownames=FALSE)
popViewport(1)

Obviously, this does not work since textplot() seems to call plot.new
no matter what options are set with par().

My question: Is it possible to archieve my goal to plot the data.frame
with textplot() next to the dotplot?

And furthermore, if it is possible to do so, is it even possible to
adjust the textplot in a way that the each row of the data.frame when
plotted using textplot() is at the same height than the corresponding
row in the dotplot? I guess that this is quite tricky and any hint on
which package or functions I could use would be very helpful.

Thank you very much.
Bernhard

Hi


Bernhard wrote:
> Hi everyone.
> 
> I want to solve the following problem. I have a data.frame and I
> create a dotplot using lattice.
> 
> Then I want to use the grid-package to create a combined graphic which
> contains the dotplot as well as a textplot() (using package gplots) of
> the data.frame next to the dotplot.
> 
> Example code:
> library(lattice)
> library(grid)
> library(gplots)
> 
> xx <- data.frame(f=factor(rep(1:5, each=5)), gr= rep(c("gr1",
"gr2",
> "gr3", "gr4", "gr5"), 5), val=rnorm(25))
> grid.newpage()
> pushViewport(viewport(layout = grid.layout(1, 2)))
> pushViewport(viewport(layout.pos.col=1, layout.pos.row=1))
>     p <- dotplot(f ~ val, groups=gr, xx, cex=1.7, pch=20)
>     print(p, newpage=FALSE)
> popViewport(1)
> 
> pushViewport(viewport(layout.pos.col=2, layout.pos.row=1))
>     textplot(xx, show.rownames=FALSE)
> popViewport(1)
> 
> Obviously, this does not work since textplot() seems to call plot.new
> no matter what options are set with par().
> 
> My question: Is it possible to archieve my goal to plot the data.frame
> with textplot() next to the dotplot?

This should work (adjustments to your code are accompanied by comments):

library(lattice)
library(grid)
library(gplots)
# Also need gridBase
library(gridBase)

# Start a traditional graphics page
plot.new()

xx <- data.frame(f=factor(rep(1:5, each=5)), gr= rep(c("gr1",
"gr2",
"gr3", "gr4", "gr5"), 5), val=rnorm(25))
grid.newpage()
pushViewport(viewport(layout = grid.layout(1, 2)))
pushViewport(viewport(layout.pos.col=1, layout.pos.row=1))
    p <- dotplot(f ~ val, groups=gr, xx, cex=1.7, pch=20)
    print(p, newpage=FALSE)
popViewport(1)

pushViewport(viewport(layout.pos.col=2, layout.pos.row=1))
# Prevent textplot() starting new page
par(new=TRUE)
# Locate traditional plot region based on grid viewport
par(plt=gridPLT())
    textplot(xx, show.rownames=FALSE)
popViewport(1)

> And furthermore, if it is possible to do so, is it even possible to
> adjust the textplot in a way that the each row of the data.frame when
> plotted using textplot() is at the same height than the corresponding
> row in the dotplot? I guess that this is quite tricky and any hint on
> which package or functions I could use would be very helpful.

This is starting to push things a bit;  you are getting to the point
where it might be easier to start drawing things yourself.  However,
here's one approach that might give you what you want.  The idea is
to draw the textplot() for each level of the factor in its own viewport
(to get the alignment with the scale on the lattice plot).

# Start a traditional graphics page
plot.new()
grid.newpage()
# Viewport in left half of page to leave space for text
pushViewport(viewport(x=0, width=.5, just="left"))
p <- dotplot(f ~ val, groups=gr, xx, cex=1.7, pch=20)
print(p, newpage=FALSE,
      # Control name of lattice viewport so we can get back to it
      prefix="lattice")
# Leave all viewports so we can navigate back
upViewport(1)

# Go back into the lattice plot viewport to add text bits
downViewport("lattice.panel.1.1.off.vp")
# For each level of 'f'
for (i in levels(xx$f)) {
	# Push a viewport off to the side
      pushViewport(viewport(x=unit(1, "npc") + unit(1,
"cm"),
                            # Here's the vertical alignment bit
                            y=unit(as.numeric(as.character(i)),
                                   "native") +
                              unit(1, "lines"),
                            height=1/(length(levels(xx$f)) + 1),
                            just=c("left", "top")))
      # Just to show where we are (can be removed)
	grid.rect(gp=gpar(col="grey"))
      # Align the traditional plot region
      par(new=TRUE)
	par(fig=gridFIG())
      # Fiddle with size of text
	par(cex=0.7)
	# Draw the relevant subset of the data frame
	textplot(xx[xx$f == i, ], halign="left", valign="top",
               mar=rep(0, 4))
      popViewport()
}
# Final tidy up
upViewport(0)

Bits of this are very your-example-specific, but this might be enough
for a one-off.

Paul

> Thank you very much.
> Bernhard
> 
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-- 
Dr Paul Murrell
Department of Statistics
The University of Auckland
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paul at stat.auckland.ac.nz
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