Mirela Tulbure
2008-Mar-01 00:47 UTC
[R] model R^2 and partial R^2 values for CART analysis in R
Dear R-list members, I am doing a CART analysis in R using the rpart function in the rpart package: Phrag.rpart=rpart(PhragDiff~., data = Phrag, method="anova", xval=10). I used the xerror values in the CP table to prune the tree to 4 nsplits: CP nsplit rel error xerror xstd 1 0.098172 0 1.00000 1.02867 0.12768 2 0.055991 3 0.70548 1.00823 0.12911 3 0.029306 4 0.64949 0.83275 0.12074 4 0.018943 5 0.62019 0.86994 0.12467 5 0.010503 6 0.60124 0.86975 0.12080 6 0.010000 7 0.59074 0.87944 0.11757 I would like to get R^2 values for the model as well as partial R^2 values for each split. I?ve read that the R^2 = 1-rel error, so I am assuming that in my case this would be 1-0.64949. Is this correct? Are the relative R^2 values the CP values? Your help would be much appreciated. Many thanks in advance, Mirela ____________________________________________________________________________________ Looking for last minute shopping deals? Find them fast with Yahoo! Search. http://tools.search.yahoo.com/newsearch/category.php?category=shopping