On Tue, 18-Dec-2007 at 11:21AM -0500, James W. MacDonald wrote:
|> Duncan Murdoch wrote:
|> > Yes, I agree. (As an aside, there's actually a capital S in
|> > smoothScatter(), and it's a bit of a pain to install, because
|> > geneplotter depends on something that depends on DBI, which is not so
|> > easily available these days.)
|>
|> Somehow I always forget the capital S and wonder if I have loaded the
|> correct package ;-D
Maybe you're misled from the output when the package is installed:
>>> Building/Updating help pages for package 'geneplotter'
Formats: text html latex example
GetColor text html latex example
Makesense text html latex example
alongChrom text html latex example
amplicon.plot text html latex example
cColor text html latex example
[...]
multiecdf text html latex example
openHtmlPage text html latex example
panel.smoothScatter text html latex example
plotChr text html latex example
plotExpressionGraph text html latex example
savepng text html latex example
smoothscatter text html latex example
** building package indices ...
* DONE (geneplotter)
Notice that the panel function has a capital S in its name but not the
basic function. Does that point to a slight bug somewhere? Could it
produce a more serious problem?
|>
|> As for installing the required dependencies, I believe this is actually
|> quite straightforward:
|>
|> source("http://www.bioconductor.org/biocLite.R")
|> biocLite("geneplotter")
|>
|> Should install geneplotter and all required dependencies.
That was about as easy as it would be possible to make it. Thank you
for that.
best
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