R help - Oct 2007 - Error: X11 cannot allocate additional graphics colours.

Dear All

Another one I have touched on before with a much older OS and version.

My sessionInfo() is:
> sessionInfo()
R version 2.5.1 (2007-06-27) 
i686-redhat-linux-gnu 

locale:
LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.U
TF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-
8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_ID
ENTIFICATION=C

attached base packages:
[1] "stats"     "graphics"  "grDevices"
"utils"     "datasets"
"methods"  
[7] "base"     

other attached packages:
DetectiV 
   "1.1" 

I'm getting the following error message when plotting a quite complex
graph:

Error in axis(side = 2, at = c(min[i] - sptl, max[i] + sptl), labels NA,  : 
        Error: X11 cannot allocate additional graphics colours.
Consider using X11 with colortype="pseudo.cube" or "gray".

The problem is I only get it under certain circumstances.  I have some
quite convoluted test code:

n <- 82
mat <- matrix(rnorm(n*10), ncol=n)
fcolors <- terrain.colors(n)
image(z=mat, axes=FALSE)
oneis <- 1 / ncol(mat)
sptl <- oneis / 3
max <- 1:n * oneis
min <- c(0, max[1:length(max)-1])
for (i in 1:n) {
	axis(side=2, at=c(min[i]-sptl,max[i]+sptl), labels=NA, line=0.9,
lwd=3, lty=1, tick=TRUE, tck=0, col=fcolors[i],lend=2)
}

Now, this code works without error on values of n up to and including
81, but produces the error when it is 82:

Error in axis(side = 2, at = c(min[i] - sptl, max[i] + sptl), labels NA,  : 
        Error: X11 cannot allocate additional graphics colours.
Consider using X11 with colortype="pseudo.cube" or "gray".

The issue I have with it is that if I do a normal plot operation, I
don't get the error!

n <- 82
fcolors <- terrain.colors(n)
plot(1:n,1:n, col=fcolors)

Here the plot works, there are no errors and the colours come out fine.
But when I use the axis command, in the more complex code above, I get
an error.

The real question I want to know is how can I enable R (or my OS) to
plot a greater number of colours?  I can plot 820 colours on R under
windows, probably more, I just plucked 820 out of the air.  I'm guessing
this is because my windows graphics card can produce that many colours,
whereas on linux I am limited by what x-windows can produce, but there
must be some way of increasing the number of colours I can plot using R
under linux...?

Many thanks
Mick

The information contained in this message may be confide...{{dropped:14}}

You knew this?

 	http://tolstoy.newcastle.edu.au/R/e2/help/06/09/0640.html

I cannot replicate your error. I use n <- 1000 on R-2.6.0, and it still 
works.


Only a guess, but maybe your X setup is out of date. Maybe an update would 
help?

As for why axis triggers this, axis uses all the colors, but image only 
uses (something like) those that fall into the bins shown here:

 	hist( mat, breaks=n )

As you see there are usually some empty bins and those colors do not get 
rendered till axis() does its thing.

Chuck

On Mon, 15 Oct 2007, michael watson (IAH-C) wrote:
> Dear All
>
> Another one I have touched on before with a much older OS and version.
>
> My sessionInfo() is:
>> sessionInfo()
> R version 2.5.1 (2007-06-27)
> i686-redhat-linux-gnu
>
> locale:
> LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.U
> TF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-
> 8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_ID
> ENTIFICATION=C
>
> attached base packages:
> [1] "stats"     "graphics"  "grDevices"
"utils"     "datasets"
> "methods"
> [7] "base"
>
> other attached packages:
> DetectiV
>   "1.1"
>
> I'm getting the following error message when plotting a quite complex
> graph:
>
> Error in axis(side = 2, at = c(min[i] - sptl, max[i] + sptl), labels >
NA,  :
>        Error: X11 cannot allocate additional graphics colours.
> Consider using X11 with colortype="pseudo.cube" or
"gray".
>
> The problem is I only get it under certain circumstances.  I have some
> quite convoluted test code:
>
> n <- 82
> mat <- matrix(rnorm(n*10), ncol=n)
> fcolors <- terrain.colors(n)
> image(z=mat, axes=FALSE)
> oneis <- 1 / ncol(mat)
> sptl <- oneis / 3
> max <- 1:n * oneis
> min <- c(0, max[1:length(max)-1])
> for (i in 1:n) {
> 	axis(side=2, at=c(min[i]-sptl,max[i]+sptl), labels=NA, line=0.9,
> lwd=3, lty=1, tick=TRUE, tck=0, col=fcolors[i],lend=2)
> }
>
> Now, this code works without error on values of n up to and including
> 81, but produces the error when it is 82:
>
> Error in axis(side = 2, at = c(min[i] - sptl, max[i] + sptl), labels >
NA,  :
>        Error: X11 cannot allocate additional graphics colours.
> Consider using X11 with colortype="pseudo.cube" or
"gray".
>
> The issue I have with it is that if I do a normal plot operation, I
> don't get the error!
>
> n <- 82
> fcolors <- terrain.colors(n)
> plot(1:n,1:n, col=fcolors)
>
> Here the plot works, there are no errors and the colours come out fine.
> But when I use the axis command, in the more complex code above, I get
> an error.
>
> The real question I want to know is how can I enable R (or my OS) to
> plot a greater number of colours?  I can plot 820 colours on R under
> windows, probably more, I just plucked 820 out of the air.  I'm
guessing
> this is because my windows graphics card can produce that many colours,
> whereas on linux I am limited by what x-windows can produce, but there
> must be some way of increasing the number of colours I can plot using R
> under linux...?
>
> Many thanks
> Mick
>
> The information contained in this message may be confi...{{dropped:15}}