R help - Oct 2007 - lpSolve doesn't compile because of a malloc.h error

Isn't the message rather clear?  You need to edit the package sources and 
replace malloc.h by stdlib.h (or remove the former if the latter is 
already there, as in this case).

And BTW, 'gcc-4.2.2' is unreleased, but imminent (as R 2.6.0 is).

On Mon, 1 Oct 2007, vittorio wrote:
> Under freebsd 6.2-p7 i386, R 2.5.1,gcc-4.2.2 I'm unable to compile
package
> lpSolve because:
>
> hpbsd# R CMD INSTALL lpSolve_5.5.8.tar.gz
> * Installing to library '/usr/local/lib/R/library'
> * Installing *source* package 'lpSolve' ...
> ** libs
> cc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I .
-DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL
-DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL
-DINLINE=static -DParanoia -I/usr/local/include  -D__NO_MATH_INLINES  -fpic  -O2
-fno-strict-aliasing -pipe -march=prescott -c
> colamd.c -o colamd.o
> cc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I .
-DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL
-DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL
-DINLINE=static -DParanoia -I/usr/local/include  -D__NO_MATH_INLINES  -fpic  -O2
-fno-strict-aliasing -pipe -march=prescott -c
> commonlib.c -o commonlib.o
> ................................................................
> cc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I .
-DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL
-DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL
-DINLINE=static -DParanoia -I/usr/local/include  -D__NO_MATH_INLINES  -fpic  -O2
-fno-strict-aliasing -pipe -march=prescott -c
> lp_wlp.c -o lp_wlp.o
> cc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I .
-DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL
-DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL
-DINLINE=static -DParanoia -I/usr/local/include  -D__NO_MATH_INLINES  -fpic  -O2
-fno-strict-aliasing -pipe -march=prescott -c
> lpslink55.c -o lpslink55.o
> In file included from lpslink55.c:11:
> /usr/include/malloc.h:3:2: #error "<malloc.h> has been replaced
by <stdlib.h>"
> *** Error code 1
>
> Stop in /tmp/R.INSTALL.zVvtvK/lpSolve/src.
> ERROR: compilation failed for package 'lpSolve'
> ** Removing '/usr/local/lib/R/library/lpSolve'
> ======================================>
> Now, both malloc.h and stdlib.h are under /usr/include.
>
> What's wrong with it?
>
> Ciao
> Vittorio
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

Under freebsd 6.2-p7 i386, R 2.5.1,gcc-4.2.2 I'm unable to compile package 
lpSolve because:

hpbsd# R CMD INSTALL lpSolve_5.5.8.tar.gz
* Installing to library '/usr/local/lib/R/library'
* Installing *source* package 'lpSolve' ...
** libs
cc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I .
-DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL
-DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL
-DINLINE=static -DParanoia -I/usr/local/include  -D__NO_MATH_INLINES  -fpic  -O2
-fno-strict-aliasing -pipe -march=prescott -c
colamd.c -o colamd.o
cc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I .
-DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL
-DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL
-DINLINE=static -DParanoia -I/usr/local/include  -D__NO_MATH_INLINES  -fpic  -O2
-fno-strict-aliasing -pipe -march=prescott -c
commonlib.c -o commonlib.o
................................................................
cc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I .
-DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL
-DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL
-DINLINE=static -DParanoia -I/usr/local/include  -D__NO_MATH_INLINES  -fpic  -O2
-fno-strict-aliasing -pipe -march=prescott -c
lp_wlp.c -o lp_wlp.o
cc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I .
-DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL
-DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL
-DINLINE=static -DParanoia -I/usr/local/include  -D__NO_MATH_INLINES  -fpic  -O2
-fno-strict-aliasing -pipe -march=prescott -c
lpslink55.c -o lpslink55.o
In file included from lpslink55.c:11:
/usr/include/malloc.h:3:2: #error "<malloc.h> has been replaced by
<stdlib.h>"
*** Error code 1

Stop in /tmp/R.INSTALL.zVvtvK/lpSolve/src.
ERROR: compilation failed for package 'lpSolve'
** Removing '/usr/local/lib/R/library/lpSolve'
======================================
Now, both malloc.h and stdlib.h are under /usr/include.

What's wrong with it?

Ciao
Vittorio