Namanh Vu Hoang
2007-Apr-15 22:23 UTC
[R] correlation between multiple adjacency matrix graphs
I'm looking for a way to do (product moment) graph correlation
between multiple unlabeled graphs G to Gn. Basically I have 900
individual samples of a 48x48 adjacency matrix which I've listed as a
3rd dimension of a single array. So it looks something like [48,48,i]
where i is each individual subject's adjacency matrix.
If i run the gcor function on any two graphs for example [,,1] & [,,
2] it returns a single graph correlation value however if I run it
across the entire 3 dimensional array i get a 48x48 graph correlation
matrix.
For example it sort of looks like this with the exception that it
would be 48x48
[ , ,1]
A B C D E
A 0 0 0 0 0
B 1 0 0 0 0
C 0 0 0 0 0
D 1 1 0 0 0
E 0 1 0 1 0
[ , ,1]
A B C D E
A 0 0 0 0 0
B 1 0 0 0 0
C 0 1 0 0 0
D 1 0 0 0 0
E 0 1 0 0 0
all the way to
[ , ,900]
A B C D E
A 0 0 0 0 0
B 1 0 0 0 0
C 0 1 0 0 0
D 1 0 0 0 0
E 0 1 0 0 0
Is there a way to generate a single Pearson's product-moment
correlation coefficient across all 900 individual adjacency matrices?
The only way i can think of so far is to create my own function that
keeps looping graphs pairs using gcor but I am hopeful there is
something known way to do this in a simpler manner.
I'm also unclear about what the standard nomenclature for this is.
Sometimes I hear multidimensional Array other times i hear people
refer to it as a multiple array list. This might help as maybe I'm
just looking up the wrong thing.
Thanks.
-------------------------------------------------------
Namanh Vu Hoang
Department of Sociology: Undergraduate
hoangnv@uci.edu
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