Namanh Vu Hoang
2007-Apr-15 22:23 UTC
[R] correlation between multiple adjacency matrix graphs
I'm looking for a way to do (product moment) graph correlation between multiple unlabeled graphs G to Gn. Basically I have 900 individual samples of a 48x48 adjacency matrix which I've listed as a 3rd dimension of a single array. So it looks something like [48,48,i] where i is each individual subject's adjacency matrix. If i run the gcor function on any two graphs for example [,,1] & [,, 2] it returns a single graph correlation value however if I run it across the entire 3 dimensional array i get a 48x48 graph correlation matrix. For example it sort of looks like this with the exception that it would be 48x48 [ , ,1] A B C D E A 0 0 0 0 0 B 1 0 0 0 0 C 0 0 0 0 0 D 1 1 0 0 0 E 0 1 0 1 0 [ , ,1] A B C D E A 0 0 0 0 0 B 1 0 0 0 0 C 0 1 0 0 0 D 1 0 0 0 0 E 0 1 0 0 0 all the way to [ , ,900] A B C D E A 0 0 0 0 0 B 1 0 0 0 0 C 0 1 0 0 0 D 1 0 0 0 0 E 0 1 0 0 0 Is there a way to generate a single Pearson's product-moment correlation coefficient across all 900 individual adjacency matrices? The only way i can think of so far is to create my own function that keeps looping graphs pairs using gcor but I am hopeful there is something known way to do this in a simpler manner. I'm also unclear about what the standard nomenclature for this is. Sometimes I hear multidimensional Array other times i hear people refer to it as a multiple array list. This might help as maybe I'm just looking up the wrong thing. Thanks. ------------------------------------------------------- Namanh Vu Hoang Department of Sociology: Undergraduate hoangnv@uci.edu [[alternative HTML version deleted]]
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