hi,
I have two private packages, the first (`pkc') depending on the second one
(`roiutils'). The source code and DESCRIPTION files describes the dependency
as it should be ('Imports', `require'), at least I think so.
now, running
R CMD CHECK pkc
yields the following output in which I have inserted my
questions (lines starting with -->):
* checking for working latex ... OK
* using log directory '/Users/vdh/rfiles/Rlibrary/.check/pkc.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'pkc/DESCRIPTION' ... OK
* this is package 'pkc' version '1.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pkc' can be installed ... WARNING
Found the following significant warnings:
missing link(s): readroi readroi readroi figure readroi conv3exmodel
readroi
missing link(s): figure readroi
--> there _are_ links to the mentioned functions (from `roiutils') in the
--> manpages of `pkc'. after installing the libs, the help system works
just
--> fine. why is it, that CHECK is complaining? can one selectively switch of
--> this warning? or how have I to specify the links to tell CHECK that
--> everything is OK?
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
Rd files with unknown sections:
/Users/vdh/rfiles/Rlibrary/pkc/man/fitdemo.Rd: example
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... WARNING
Missing link(s) in documentation object 'compfit.Rd':
readroi readroi readroi figure readroi conv3exmodel readroi
Missing link(s) in documentation object 'exp3fit.Rd':
figure readroi
--> this seems the same problem as above, right?
any hints appreciated,
joerg
hi,
second try...
I ran into problems when checking one of my packages with R CMD CHECK:
I have two packages, the first (named `pkc') depending on the second one
(named
`roiutils'). The source code and DESCRIPTION files describes the dependency
as
it should be, I think ('Imports', `require'). but if I run
R CMD CHECK pkc
I get "significant warnings" related to missing links (refering to
functions
from the second package) in the manpages of the first package as can be
seen below. despite the warnings, after installing the two packages the help
system works just fine including the cross-references.
my question:
why is it, that R CMD CHECK is complaining? can one selectively switch of this
warning? or how have I to specify the links in the manpages to tell CHECK that
everything is basically OK?
========================CUT===================================* checking for
working latex ... OK
* using log directory '/Users/vdh/rfiles/Rlibrary/.check/pkc.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'pkc/DESCRIPTION' ... OK
* this is package 'pkc' version '1.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pkc' can be installed ... WARNING
Found the following significant warnings:
missing link(s): readroi readroi readroi figure readroi conv3exmodel
readroi
missing link(s): figure readroi
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
Rd files with unknown sections:
/Users/vdh/rfiles/Rlibrary/pkc/man/fitdemo.Rd: example
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... WARNING
Missing link(s) in documentation object 'compfit.Rd':
readroi readroi readroi figure readroi conv3exmodel readroi
Missing link(s) in documentation object 'exp3fit.Rd':
figure readroi
========================CUT===================================
any hints appreciated,
joerg