李俊杰
2007-Jan-31 18:16 UTC
[R] A GSE data in the web of ncbi, GSE3524 cannot be open correctly
Hi, all
I met a problem to query GSE3524, which cannot be open on my computer. I
hope some of you would be kind to give me some advice. Thanks!
The code is as follow:
##################
library(GEOquery)
gsename="GSE3524"
gse=getGEO(gsename)
##################
The error information follows as
ÊÔ¿ªURL'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/by_series/GSE3524/GSE3524_family.soft.gz'
ftp data connection made, file length 3586385 bytes
´ò¿ªÁËURL
downloaded 3502Kb
File stored at:
C:\DOCUME~1\ADMINI~1\LOCALS~1\Temp\Rtmpturmrb/GSE3524.soft.gz
Parsing....
^PLATFORM = GPL96
^SAMPLE = GSM80461
´íÎóÔÚsubstr(x, start = matches + patlen, stop = 1e+07) :
¶à×Ö½Ú×Ö·û´®²»¶Ô
´ËÍâ: Warning message:
ÊäÈëµÄ×Ö·û´®2²»ÊÊÓÃÓÚ´ËÓïÑÔ»·¾³ in: regexpr(pattern, text, extended, fixed,
useBytes)> gsm.temp2<-getGEO(gsmname[2])
Junjie Li
Tsinghua University
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