李俊杰
2007-Jan-31 18:16 UTC
[R] A GSE data in the web of ncbi, GSE3524 cannot be open correctly
Hi, all I met a problem to query GSE3524, which cannot be open on my computer. I hope some of you would be kind to give me some advice. Thanks! The code is as follow: ################## library(GEOquery) gsename="GSE3524" gse=getGEO(gsename) ################## The error information follows as ÊÔ¿ªURL'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/by_series/GSE3524/GSE3524_family.soft.gz' ftp data connection made, file length 3586385 bytes ´ò¿ªÁËURL downloaded 3502Kb File stored at: C:\DOCUME~1\ADMINI~1\LOCALS~1\Temp\Rtmpturmrb/GSE3524.soft.gz Parsing.... ^PLATFORM = GPL96 ^SAMPLE = GSM80461 ´íÎóÔÚsubstr(x, start = matches + patlen, stop = 1e+07) : ¶à×Ö½Ú×Ö·û´®²»¶Ô ´ËÍâ: Warning message: ÊäÈëµÄ×Ö·û´®2²»ÊÊÓÃÓÚ´ËÓïÑÔ»·¾³ in: regexpr(pattern, text, extended, fixed, useBytes)> gsm.temp2<-getGEO(gsmname[2])Junjie Li Tsinghua University [[alternative HTML version deleted]]