Cannot help you much with that as the thing seems to compile normally. As
you use a global R installation, try giving yourself write permissions in
/usr/lib/R/library, this might help. Otherwise, try installing R from source
in your home or elsewhere where you have all write permissions and check it
again.
Anyway, I wanted also to advertise my package because you use rimage:
http://bioconductor.org/packages/2.0/bioc/html/EBImage.html
The difference is - it supports up to 95 image formats and implements many
image processing methods. In fact you can combine this with functions from
rimage. If interested, go for a development version above and it works on
Fedora 6 Zod and 2.4.1 - did try just today.
Best regards,
Oleg
On 31/12/06, John Kornak <john.kornak@ucsf.edu>
wrote:>
>
> Dear R list members
>
> I would be grateful if anyone could guide me to a solution for fixing my
> rimage package problem described below.
>
> I recently upgraded my machine from fedora core 3 to fedora core 6 and
> then upgraded R from version 2.3.1 from version 2.4.1.
>
> I then fired up R, tried to load the rimage library and received the
> following messages:
>
> > library(rimage)
> Error in dyn.load(x, as.logical(local), as.logical(now)) :
> unable to load shared library
> '/usr/lib/R/library/rimage/libs/rimage.so':
> /usr/lib/R/library/rimage/libs/rimage.so: cannot restore segment prot
> after reloc: Permission denied
> Error in library(rimage) : .First.lib failed for 'rimage'
> >
>
> I tried removing and re-installing rimage. The install seemed to go well
> but I received the identical error messages upon loading. (I provide the
> output from the package re-install at the very end of this email in case
> it is useful.)
>
> I am running R version 2.4.1 and fc6 on a dual boot (with XP) Pentium 4
> Dell Dimension 8250. I have both fftw-2.1.5 and fftw-3.1.2 on my machine
> within /usr/local and .
>
> rimage was working fine on the same machine before I upgraded from R
> 2.3.1 and fc3.
>
> I searched online but was unable to find any relevant posts.
>
> Thanks again
>
> John
> --
> John Kornak,PhD
> Assistant Professor
> Departments of Radiology, and Epidemiology & Biostatistics
> University of California, San Francisco
> Box 0946
> San Francisco, CA 94143
> Tel: (415) 353-4740
> fax: (415) 353-9423
> Email: john.kornak@ucsf.edu
>
> #############################################
>
> > install.packages("rimage")
> trying URL
'http://cran.cnr.Berkeley.edu/src/contrib/rimage_0.5-7.tar.gz'
> Content type 'application/x-gzip' length 331029 bytes
> opened URL
> =================================================> downloaded 323Kb
>
> * Installing *source* package 'rimage' ...
> checking for g++... g++
> checking for C++ compiler default output... a.out
> checking whether the C++ compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C++ compiler... yes
> checking whether g++ accepts -g... yes
> checking for gcc... gcc
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ANSI C... none needed
> checking how to run the C preprocessor... gcc -E
> checking for egrep... grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking fftw.h usability... yes
> checking fftw.h presence... yes
> checking for fftw.h... yes
> checking jpeglib.h usability... yes
> checking jpeglib.h presence... yes
> checking for jpeglib.h... yes
> checking for inline... inline
> checking for stdlib.h... (cached) yes
> checking for GNU libc compatible malloc... yes
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> g++ -I/usr/lib/R/include -I/usr/lib/R/include -g -O2
> -I/usr/local/include -fpic -O3 -g -c equalize.cpp -o equalize.o
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -g -O2
> -I/usr/local/include -fpic -O3 -g -std=gnu99 -c fftw_access_func.c
> -o fftw_access_func.o
> g++ -I/usr/lib/R/include -I/usr/lib/R/include -g -O2
> -I/usr/local/include -fpic -O3 -g -c freqfilters.cpp -o freqfilters.o
> g++ -I/usr/lib/R/include -I/usr/lib/R/include -g -O2
> -I/usr/local/include -fpic -O3 -g -c interface.cpp -o interface.o
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -g -O2
> -I/usr/local/include -fpic -O3 -g -std=gnu99 -c jpegio.c -o jpegio.o
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -g -O2
> -I/usr/local/include -fpic -O3 -g -std=gnu99 -c laplacian.c -o
> laplacian.o
> laplacian.c: In function 'laplacian':
> laplacian.c:14: warning: implicit declaration of function
'clearFrame'
> g++ -I/usr/lib/R/include -I/usr/lib/R/include -g -O2
> -I/usr/local/include -fpic -O3 -g -c matrix.cpp -o matrix.o
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -g -O2
> -I/usr/local/include -fpic -O3 -g -std=gnu99 -c smooth.c -o smooth.o
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -g -O2
> -I/usr/local/include -fpic -O3 -g -std=gnu99 -c sobel.c -o sobel.o
> g++ -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o rimage.so equalize.o
> fftw_access_func.o freqfilters.o interface.o jpegio.o laplacian.o
> matrix.o smooth.o sobel.o -ljpeg -lfftw -L/usr/lib/R/lib -lR
> ** R
> ** data
> ** help
> >>> Building/Updating help pages for package 'rimage'
> Formats: text html latex example
> cat text html latex example
> clipping text html latex example
> equalize text html latex example
> fftImg text html latex example
> fftw text html latex
> highpass text html latex example
> imageType text html latex example
> imagematrix text html latex example
> laplacian text html latex example
> logo text html latex example
> lowpass text html latex example
> meanImg text html latex example
> minImg text html latex example
> normalize text html latex example
> plot.imagematrix text html latex example
> print.imagematrix text html latex example
> read.jpeg text html latex example
> rgb2grey text html latex example
> sobel text html latex example
> sobel.h text html latex example
> sobel.v text html latex example
> thresholding text html latex example
> ** building package indices ...
> * DONE (rimage)
>
> The downloaded packages are in
> /tmp/RtmprJeHV4/downloaded_packages
> > library(rimage)
> Error in dyn.load(x, as.logical(local), as.logical(now)) :
> unable to load shared library
> '/usr/lib/R/library/rimage/libs/rimage.so':
> /usr/lib/R/library/rimage/libs/rimage.so: cannot restore segment prot
> after reloc: Permission denied
> Error in library(rimage) : .First.lib failed for 'rimage'
> >
>
> ______________________________________________
> R-help@stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
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