R help - Dec 2005 - help on barplots

Hello, I am a beginner with R and I would need some help with doing barplots.
My problem is that I would like to include both diffrent colors of the bars 
and  precence/absence of shading lines in the barplots. When reading in the 
help file about the "col" command it states:

col: a vector of colors for the bars or bar components. By
           default, grey is used if 'height' is a vector, and a
           gamma-corrected grey palette if 'height' is a matrix.

It seems like the default is to color the bar components, when I add both 
col and density the shading lines gets the colors in the col vector. What I 
would need is diffrent colors of the bars and black shading lines.
How could I solve this problem?
Thanksful for answer/ Bj??rn Rogell


 > meanbufoAN
     TR101     TR203     TR302     TR404     TR509     TR611     TR710 
TR812
12.329885 12.712815 12.115556 12.570500 11.580300 11.920851 10.094532  9.854988

barplotANbufo<-barplot(meanbufoAN,ylim=c(0,15),col=c("white","lightgrey","white","lightgrey","white","lightgrey","white","lightgrey"),names.arg=c("1","2","2","4","5","6","7","8"),density=c(0,0,12,12,0,0,12,12),xlab="",
ylab="Length")

On Mon, 2005-12-19 at 12:27 +0100, Bj伱伓rn Rogell wrote:
> Hello, I am a beginner with R and I would need some help with doing
> barplots.
> My problem is that I would like to include both diffrent colors of the
> bars 
> and  precence/absence of shading lines in the barplots. When reading
> in the 
> help file about the "col" command it states:
> 
> col: a vector of colors for the bars or bar components. By
>            default, grey is used if 'height' is a vector, and a
>            gamma-corrected grey palette if 'height' is a matrix.
> 
> It seems like the default is to color the bar components, when I add
> both 
> col and density the shading lines gets the colors in the col vector.
> What I 
> would need is diffrent colors of the bars and black shading lines.
> How could I solve this problem?
> Thanksful for answer/ Bj伱伓rn Rogell
> 
> 
>  > meanbufoAN
>      TR101     TR203     TR302     TR404     TR509     TR611
> TR710 
> TR812
> 12.329885 12.712815 12.115556 12.570500 11.580300 11.920851 10.094532
> 9.854988
> 
>
barplotANbufo<-barplot(meanbufoAN,ylim=c(0,15),col=c("white","lightgrey","white",
>
>
"lightgrey","white","lightgrey","white","lightgrey"),
>
>
names.arg=c("1","2","2","4","5","6","7","8"),density=c(0,0,12,12,0,0,12,12),xlab="",
> ylab="Length")

The problem here is that the bars are drawn within barplot() using
rect(), which does not allow for both bar colors and line shadings
simultaneously.  However, there is a workaround.

This involves drawing the initial barplot using the colors that you want
for the bars and then using barplot a second time, with 'add = TRUE' and
'col = NA'. The former will 'overplot' the initial barplot
without
clearing the plot device first. The latter will draw the shading lines,
but using a transparent background color, so that it retains the initial
bar colors.

Thus:

barplotANbufo <- barplot(meanbufoAN, ylim = c(0, 15),
                         col = c("white", "lightgrey"),
                         names.arg = c(1, 2, 2, 4:8),
                         xlab="", ylab="Length")

barplot(meanbufoAN, ylim = c(0, 15), col = NA,
        density = rep(c(0, 12), 2, each = 2),
        axes = FALSE, add = TRUE)

Note also some efficiencies in the specification of the colors (which
will be recycled), names.arg (presuming that the '2' should be there
twice) and density in the second call using rep().

HTH,

Marc Schwartz