R help - Oct 2005 - Compilation package error

Dear all,
I tried to install gstat package and add the following compilation error :

------------------------>
* Installing *source* package 'gstat' ...
creating cache ./config.cache
checking for gcc... gcc
checking whether the C compiler (gcc  ) works... yes
checking whether the C compiler (gcc  ) is a cross-compiler... no
checking whether we are using GNU C... yes
checking whether gcc accepts -g... yes
checking how to run the C preprocessor... gcc -E
checking for AIX... no
checking for minix/config.h... no
checking for POSIXized ISC... no
checking for ANSI C header files... yes
checking for working const... yes
checking whether time.h and sys/time.h may both be included... yes
checking for 8-bit clean memcmp... yes
checking for vprintf... yes
checking for strstr... yes
checking for strtod... yes
checking for strtol... yes
checking for drand48... yes
checking for gettimeofday... yes
checking whether byte ordering is bigendian... no
checking for memory.h... yes
checking for ANSI C header files... (cached) yes
checking for gcc option to accept ANSI C...
checking for function prototypes... yes
checking for working const... (cached) yes
checking for complex.h... yes
checking for malloc.h... yes
checking for varargs.h... no
checking for size_t... yes
checking for working const... (cached) yes
checking whether byte ordering is bigendian... (cached) no
checking for u_int
computing machine epsilon(s)
gcc -o macheps ./src/meschach/dmacheps.c
gcc -o macheps ./src/meschach/fmacheps.c
computing M_MAX_INT
gcc -o maxint maxint.c
./src/meschach/maxint.c: In function 'main':
./src/meschach/maxint.c:37: warning: incompatible implicit declaration 
of built-in function 'printf'
checking char \\0 vs. float zeros
checking for bcopy... yes
checking for bzero... yes
checking for function prototypes
checking for function prototypes in structures
updating cache ./config.cache
creating ./config.status
creating makefile
creating src/config.h
creating src/machine.h
** libs
gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c block.c 
-o block.o
gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c 
chfactor.c -o chfactor.o
gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c copy.c 
-o copy.o
gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c data.c 
-o data.o
/tmp/ccXDZili.s: Messages de l'assembleur:
/tmp/ccXDZili.s:8032: ERREUR: Op??rande de relocalisation inconnue: 
!lituse_jsrdirect
make: *** [data.o] Erreur 1
ERROR: compilation failed for package 'gstat'
** Removing '/usr/local/lib/R/site-library/gstat'
** Restoring previous '/usr/local/lib/R/site-library/gstat'
------------------->

R run on a dec alpha station under Debian Sarge 64 bits (alpha version 
of course).
Compiler version is gcc 4.0.2.

Regards


------------------------------------------------
Emmanuel Poizot
Cnam/Intechmer
B.P. 324
50103 Cherbourg Cedex

Phone (Direct) : (00 33)(0)233887342
Fax : (00 33)(0)233887339
------------------------------------------------

This is a compiler error, not an R package error.  Please ask on a 
suitable (Debian?) compiler list.

As a possible hint, when such things happen on Solaris it indicates a 
mis-installed gcc, missing the gnu binutils it depends on.

On Mon, 24 Oct 2005, Poizot Emmanuel wrote:
> Dear all,
> I tried to install gstat package and add the following compilation error :
>
> ------------------------>
> * Installing *source* package 'gstat' ...
> creating cache ./config.cache
> checking for gcc... gcc
> checking whether the C compiler (gcc  ) works... yes
> checking whether the C compiler (gcc  ) is a cross-compiler... no
> checking whether we are using GNU C... yes
> checking whether gcc accepts -g... yes
> checking how to run the C preprocessor... gcc -E
> checking for AIX... no
> checking for minix/config.h... no
> checking for POSIXized ISC... no
> checking for ANSI C header files... yes
> checking for working const... yes
> checking whether time.h and sys/time.h may both be included... yes
> checking for 8-bit clean memcmp... yes
> checking for vprintf... yes
> checking for strstr... yes
> checking for strtod... yes
> checking for strtol... yes
> checking for drand48... yes
> checking for gettimeofday... yes
> checking whether byte ordering is bigendian... no
> checking for memory.h... yes
> checking for ANSI C header files... (cached) yes
> checking for gcc option to accept ANSI C...
> checking for function prototypes... yes
> checking for working const... (cached) yes
> checking for complex.h... yes
> checking for malloc.h... yes
> checking for varargs.h... no
> checking for size_t... yes
> checking for working const... (cached) yes
> checking whether byte ordering is bigendian... (cached) no
> checking for u_int
> computing machine epsilon(s)
> gcc -o macheps ./src/meschach/dmacheps.c
> gcc -o macheps ./src/meschach/fmacheps.c
> computing M_MAX_INT
> gcc -o maxint maxint.c
> ./src/meschach/maxint.c: In function 'main':
> ./src/meschach/maxint.c:37: warning: incompatible implicit declaration of 
> built-in function 'printf'
> checking char \\0 vs. float zeros
> checking for bcopy... yes
> checking for bzero... yes
> checking for function prototypes
> checking for function prototypes in structures
> updating cache ./config.cache
> creating ./config.status
> creating makefile
> creating src/config.h
> creating src/machine.h
> ** libs
> gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c block.c -o
> block.o
> gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c chfactor.c
> -o chfactor.o
> gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c copy.c -o 
> copy.o
> gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c data.c -o 
> data.o
> /tmp/ccXDZili.s: Messages de l'assembleur:
> /tmp/ccXDZili.s:8032: ERREUR: Op?rande de relocalisation inconnue: 
> !lituse_jsrdirect
> make: *** [data.o] Erreur 1
> ERROR: compilation failed for package 'gstat'
> ** Removing '/usr/local/lib/R/site-library/gstat'
> ** Restoring previous '/usr/local/lib/R/site-library/gstat'
> ------------------->
>
> R run on a dec alpha station under Debian Sarge 64 bits (alpha version of 
> course).
> Compiler version is gcc 4.0.2.
>
> Regards
>
>
> ------------------------------------------------
> Emmanuel Poizot
> Cnam/Intechmer
> B.P. 324
> 50103 Cherbourg Cedex
>
> Phone (Direct) : (00 33)(0)233887342
> Fax : (00 33)(0)233887339
> ------------------------------------------------
>
>
-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

Please, tell us more about the packages and libraries installed. I did compile  
and installed gstat on a machine running sid64 (unstable) with no problems. 
The only thing is that I did not compile with the -mieee-with-inexact switch.

Hope this helps.


On Monday 24 October 2005 17:07, Poizot Emmanuel wrote:
> Dear all,
> I tried to install gstat package and add the following compilation error :
>
> ------------------------>
> * Installing *source* package 'gstat' ...
> creating cache ./config.cache
> checking for gcc... gcc
> checking whether the C compiler (gcc  ) works... yes
> checking whether the C compiler (gcc  ) is a cross-compiler... no
> checking whether we are using GNU C... yes
> checking whether gcc accepts -g... yes
> checking how to run the C preprocessor... gcc -E
> checking for AIX... no
> checking for minix/config.h... no
> checking for POSIXized ISC... no
> checking for ANSI C header files... yes
> checking for working const... yes
> checking whether time.h and sys/time.h may both be included... yes
> checking for 8-bit clean memcmp... yes
> checking for vprintf... yes
> checking for strstr... yes
> checking for strtod... yes
> checking for strtol... yes
> checking for drand48... yes
> checking for gettimeofday... yes
> checking whether byte ordering is bigendian... no
> checking for memory.h... yes
> checking for ANSI C header files... (cached) yes
> checking for gcc option to accept ANSI C...
> checking for function prototypes... yes
> checking for working const... (cached) yes
> checking for complex.h... yes
> checking for malloc.h... yes
> checking for varargs.h... no
> checking for size_t... yes
> checking for working const... (cached) yes
> checking whether byte ordering is bigendian... (cached) no
> checking for u_int
> computing machine epsilon(s)
> gcc -o macheps ./src/meschach/dmacheps.c
> gcc -o macheps ./src/meschach/fmacheps.c
> computing M_MAX_INT
> gcc -o maxint maxint.c
> ./src/meschach/maxint.c: In function 'main':
> ./src/meschach/maxint.c:37: warning: incompatible implicit declaration
> of built-in function 'printf'
> checking char \\0 vs. float zeros
> checking for bcopy... yes
> checking for bzero... yes
> checking for function prototypes
> checking for function prototypes in structures
> updating cache ./config.cache
> creating ./config.status
> creating makefile
> creating src/config.h
> creating src/machine.h
> ** libs
> gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c block.c
> -o block.o
> gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c
> chfactor.c -o chfactor.o
> gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c copy.c
> -o copy.o
> gcc -I/usr/lib/R/include   -mieee-with-inexact  -fPIC  -g -O2 -c data.c
> -o data.o
> /tmp/ccXDZili.s: Messages de l'assembleur:
> /tmp/ccXDZili.s:8032: ERREUR: Op??rande de relocalisation inconnue:
> !lituse_jsrdirect
> make: *** [data.o] Erreur 1
> ERROR: compilation failed for package 'gstat'
> ** Removing '/usr/local/lib/R/site-library/gstat'
> ** Restoring previous '/usr/local/lib/R/site-library/gstat'
> ------------------->
>
> R run on a dec alpha station under Debian Sarge 64 bits (alpha version
> of course).
> Compiler version is gcc 4.0.2.
>
> Regards
>
>
> ------------------------------------------------
> Emmanuel Poizot
> Cnam/Intechmer
> B.P. 324
> 50103 Cherbourg Cedex
>
> Phone (Direct) : (00 33)(0)233887342
> Fax : (00 33)(0)233887339
> ------------------------------------------------
-- 
*************************
Miguel A. Arranz
Tol-Project
maarranz at tol-project.org