Luwis Tapiwa Diya
2005-Aug-26 16:57 UTC
[R] Help in Compliling user -defined functions in Rpart
I have been trying to write my own user defined function in Rpart.I
imitated the anova splitting rule which is given as an example.In the
work I am doing ,I am calculating the concentration index(ci) ,which
is in between -1 and +1.So my deviance is given by
abs(ci)*(1-abs(ci)).Now when I run rpart incorporating this user
defined function i get the following error message:
Error in user.split(yback[1:nback], wback[1:nback], xback[1:nback], parms, :
unused argument(s) ( ...)
Now I am failing to indentify where I am going wrong (In case I am
have made some mistake).So I was wondering if there is anybody who
have written some user defined functions of theirs and maybe if there
is any documentation with regards to user defined functions and
examples.
Regards ,
Luwis Diya
#####################################################################User
defined function
#####################################################################
temp.init<-function(y,offset,parms,wt){
if (!is.null(offset)) y<-y-offset
if (is.matrix(y))stop ("response must be a vector")
list(y=y,parms=0,numy=1,numresp=1,
summary=function(yval,dev,wt,ylevel,digits){
paste("mean=",format(signif(yval,digits)),
"MSE=",format(signif(dev/wt,digits)),
sep='')
})
}
temp.eval<-function(y,wt,parms){
n<-length(y)
r<-wt
for (i in 1:n-1) {r[i+1]=(sum(wt[1:i])+0.5*wt[i+1])/n} #fractional rank
r[1]<-0.5*wt[1]/n
wmean<-sum(y*wt)/sum(wt)
ci<-2*sum(wt*(y-wmean)*(r-0.5))/sum(wt*y) #concentration index for
socio-economic inequality
dev<-abs(ci)*(1-abs(ci)) #deviance following the gini impurity approach
list(label=wmean,deviance=dev)
}
temp.split<-function(y,wt,parms,continous){
n<-length(y)
r<-wt
for (i in 1:n-1) {r[i+1]=(sum(wt[1:i])+0.5*wt[i+1])/n}
r[1]<-0.5*wt[1]/n
wmean<-sum(y*wt)/sum(wt)
ci<-2*sum(wt*(y-wmean)*(r-0.5))/sum(wt*y)
devci<-abs(ci)*(1-abs(ci))
if(continous){
lss<-cumsum(wt*y)[-n]
rss<-sum(wt*y)-lss
lw<-cumsum(wt)[-n]
rw<-sum(wt)-lw
lm<-lss/lw
rm<-rss/rw
lcss<-cumsum(wt[1:length(lm)]*(y[1:length(lm)]-lm)*(r[1:length(lm)]-0.5))
rcss<-sum(wt*(y-wmean)*(r-0.5))-lcss
lci<-2*lcss/lss #concentration index for left side
rci<-2*rcss/rss #concentration index for right side
devlci<-abs(lci)*(1-abs(lci)) #deviance for left side
devrci<-abs(rci)*(1-abs(rci)) #deviance for right side
goodness<-devci-(lw/sum(wt))*devlci-(rw/sum(wt))*devrci
list(goodness=goodness, direction=sign(lci))
}
else {
ux<-sort(unique(x))
wtsum<-tapply(wt,x,sum)
ysum<-tapply(wt*y,x,sum)
means<-ysum/wtsum
ord<-order(means)
n<-length(ord)
lss<-cumsum(ysum[ord])[-n]
rss<-sum(ysum)-lss
lw<-cumsum(wtsum[ord])[-n]
rw<-sum(wtsum)-lw
lm<-lss/lw
rm<-rss/rw
lysum<-tapply(wt*(y-lm)*(r-0.5),x,sum)
lcss<-cumsum(lysum[ord])[-n]
rcss<-sum(lysum)-lcss
lci<-2*lcss/lss
rci<-2*rcss/rss
devlci<-abs(lci)*(1-abs(lci))
devrci<-abs(rci)*(1-abs(rci))
goodness<-devci-0.5*(lw/sum(wt))*devlci-0.5*(rw/sum(wt))*devrci
list(goodness=goodness, direction=sign(lci))
}
}
alist<-list(eval=temp.eval,split=temp.split,init=temp.init)
tree<-rpart(u~pcares+antcare.skilled+riskintb+child.born+married+mage1+mage2,
weights=popweight,method=alist)
Prof Brian Ripley
2005-Aug-26 17:44 UTC
[R] Help in Compliling user -defined functions in Rpart
On Fri, 26 Aug 2005, Luwis Tapiwa Diya wrote:> I have been trying to write my own user defined function in Rpart.I > imitated the anova splitting rule which is given as an example.In the > work I am doing ,I am calculating the concentration index(ci) ,which > is in between -1 and +1.So my deviance is given by > abs(ci)*(1-abs(ci)).Now when I run rpart incorporating this user > defined function i get the following error message: > > Error in user.split(yback[1:nback], wback[1:nback], xback[1:nback], parms, : > unused argument(s) ( ...) > > Now I am failing to indentify where I am going wrong (In case I am > have made some mistake).So I was wondering if there is anybody who > have written some user defined functions of theirs and maybe if there > is any documentation with regards to user defined functions and > examples.There is a commented example in the tests directory (of the sources). -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595