Christopher Philipson
2005-Aug-12 01:23 UTC
[R] strips according to groups in xYplot or xyplot
Dear all,
using the follwing code, i have been trying group the individual plots
from trellis graphics according to genus. adding a groups=genus colours
the lines on the individual plots accordingly. However, i need the
strips to be coloured according to genus with the lines in each plot
remaining black. using xyplot and conditioning to genus and species
light|species+genus draws an extra strip with the genus name, this
almost there, but then i have lots of blanc plots for all the
nonexistant genus species conbinations - and also i wish to retain my
error bars from xYplot.
I understand that the solution is probably making my own strip function,
but this is a little beyond my programming skills. Does anyone have any
similar examples? an example dataframe is pasted below
Many thanks
Chris
xYplot(Cbind(rgr.biomass,rgr.biomass-se,rgr.biomass+se) ~ light|species,
data=data2, between=list(x=c(0.3,0.3,0.3,0.3,0.3),y=c(0.3,0.3,0.3)),
type=c("l"), col.line="black",ylab= "rgr biomass
(g-day-1)",
xlab="% light in nursery", main="Relative Growth rates of
Diperocarps in
three simulated light conditions", par.strip.text=list(cex=0.9,
font=3),par.settings=list(axis.text=list(cex=0.7)),layout=c(6,4), grid=T)
genus light rgr.biomass species se
conformis.0.3 Dipterocarpus 0.3 0.0071360017 conformis
0.0005639106
conformis.3 Dipterocarpus 3.0 0.0114787998 conformis
0.0005139212
conformis.18 Dipterocarpus 18.0 0.0128981690 conformis
0.0007443577
beccarii.0.3 Dryobalanops 0.3 0.0043183235 beccarii
0.0008404544
lanceolata.0.3 Dryobalanops 0.3 0.0037914641 lanceolata
0.0012840799
beccarii.3 Dryobalanops 3.0 0.0086008217 beccarii
0.0007029627
lanceolata.3 Dryobalanops 3.0 0.0066640135 lanceolata
0.0010293987
beccarii.18 Dryobalanops 18.0 0.0113213323 beccarii
0.0014422309
lanceolata.18 Dryobalanops 18.0 0.0107687387 lanceolata
0.0014388931
nervosa.0.3 Hopea 0.3 -0.0009249978 nervosa
0.0018732192
sangal.0.3 Hopea 0.3 0.0019374847 sangal
0.0007375358
spp.0.3 Hopea 0.3 0.0086367776 spp
0.0004649476
nervosa.3 Hopea 3.0 0.0028767234 nervosa
0.0006551664
sangal.3 Hopea 3.0 0.0056669364 sangal
0.0005872821
spp.3 Hopea 3.0 0.0118224681 spp
0.0005562180
nervosa.18 Hopea 18.0 0.0016949373 nervosa
0.0016615030
sangal.18 Hopea 18.0 0.0041026605 sangal
0.0018584946
spp.18 Hopea 18.0 0.0114581095 spp
0.0012815084
malaanonan.0.3 Parashorea 0.3 0.0055797534 malaanonan
0.0007918039
tomentella.0.3 Parashorea 0.3 0.0123015741 tomentella
0.0008293033
malaanonan.3 Parashorea 3.0 0.0099503268 malaanonan
0.0006376027
tomentella.3 Parashorea 3.0 0.0155581595 tomentella
0.0006379742
malaanonan.18 Parashorea 18.0 0.0092196940 malaanonan
0.0017303947
tomentella.18 Parashorea 18.0 0.0163406724 tomentella
0.0013648430
argentifolia.0.3 Shorea 0.3 0.0083378142 argentifolia
0.0010850323
beccariana.0.3 Shorea 0.3 0.0070930251 beccariana
0.0004610866
faguetiana.0.3 Shorea 0.3 0.0045384372 faguetiana
0.0010002449
gibbosa.0.3 Shorea 0.3 0.0120252725 gibbosa
0.0015315410
guiso.0.3 Shorea 0.3 0.0016886809 guiso
0.0004390734
johorensis.0.3 Shorea 0.3 0.0046130010 johorensis
0.0013987125
leprosula.0.3 Shorea 0.3 0.0054931197 leprosula
0.0007935381
macrophylla.0.3 Shorea 0.3 0.0071376385 macrophylla
0.0006889700
macroptera.0.3 Shorea 0.3 0.0044181634 macroptera
0.0005528986
oleosa.fallax.0.3 Shorea 0.3 0.0045416334 oleosa.fallax
0.0004696663
ovalis.0.3 Shorea 0.3 0.0021653329 ovalis
0.0014667085
parvifolia.0.3 Shorea 0.3 0.0031730144 parvifolia
0.0002314153
parvistipulata.0.3 Shorea 0.3 0.0108939901 parvistipulata
0.0007272541
superba.0.3 Shorea 0.3 0.0048611998 superba
0.0005558181
argentifolia.3 Shorea 3.0 0.0130474184 argentifolia
0.0005603928
beccariana.3 Shorea 3.0 0.0116513374 beccariana
0.0006809518
faguetiana.3 Shorea 3.0 0.0056884859 faguetiana
0.0024317150
gibbosa.3 Shorea 3.0 0.0163350328 gibbosa
0.0008753554
guiso.3 Shorea 3.0 0.0039323112 guiso
0.0008966266
johorensis.3 Shorea 3.0 0.0057245098 johorensis
0.0012002584
leprosula.3 Shorea 3.0 0.0110078404 leprosula
0.0006868679
macrophylla.3 Shorea 3.0 0.0115086497 macrophylla
0.0006057665
macroptera.3 Shorea 3.0 0.0083571394 macroptera
0.0004631552
oleosa.fallax.3 Shorea 3.0 0.0087806875 oleosa.fallax
0.0006363115
ovalis.3 Shorea 3.0 0.0048820034 ovalis
0.0014104024
parvifolia.3 Shorea 3.0 0.0078921667 parvifolia
0.0004507610
parvistipulata.3 Shorea 3.0 0.0148271032 parvistipulata
0.0005077023
superba.3 Shorea 3.0 0.0085652932 superba
0.0010371722
argentifolia.18 Shorea 18.0 0.0132702301 argentifolia
0.0016208120
beccariana.18 Shorea 18.0 0.0109954252 beccariana
0.0006496374
faguetiana.18 Shorea 18.0 0.0049321550 faguetiana
0.0008261597
gibbosa.18 Shorea 18.0 0.0188341938 gibbosa
0.0008460866
guiso.18 Shorea 18.0 0.0065560144 guiso
0.0013176760
johorensis.18 Shorea 18.0 0.0057575280 johorensis
0.0014724596
leprosula.18 Shorea 18.0 0.0156544894 leprosula
0.0006584250
macrophylla.18 Shorea 18.0 0.0111129238 macrophylla
0.0004117240
macroptera.18 Shorea 18.0 0.0097310849 macroptera
0.0003881022
oleosa.fallax.18 Shorea 18.0 0.0089809752 oleosa.fallax
0.0003670370
ovalis.18 Shorea 18.0 0.0062264658 ovalis
0.0009884059
parvifolia.18 Shorea 18.0 0.0078973351 parvifolia
0.0011538826
parvistipulata.18 Shorea 18.0 0.0159302434 parvistipulata
0.0004134491
superba.18 Shorea 18.0 0.0097285994 superba
0.0007884945
--
=======================================Mr Christopher D. Philipson,
PhD Student,
University of Z??rich,
Institute for Environmental Sciences,
Winterthurstrasse 190
CH - 8057 Z??rich
Tel: +41 44 635 6129
Fax: +41 44 635 5711