R help - Feb 2005 - The system command and the LD_LIBRARY_PATH

Hi R-gurus,

In my envirovment I have specified the LD_LIBRARY_PATH to
/data/opt/libmy/lib

After starting R the LD_LIBRARY_PATH variable is
changed.
> Sys.getenv("LD_LIBRARY_PATH")
"/data/opt/R-devel//lib/R/lib:/usr/local/lib:/usr/X11R6/lib:/data/opt/libmy/lib"


The problem is that in /usr/local/lib is an acient version of mylib hence
a call to _system_ with fails badly.



Suggestions?

Eryk

On Tue, 22 Feb 2005, W.E. Wolski wrote:
> Hi R-gurus,
>
> In my envirovment I have specified the LD_LIBRARY_PATH to
> /data/opt/libmy/lib
>
> After starting R the LD_LIBRARY_PATH variable is changed.
>> Sys.getenv("LD_LIBRARY_PATH")
>
>
"/data/opt/R-devel//lib/R/lib:/usr/local/lib:/usr/X11R6/lib:/data/opt/libmy/lib"
>
>
> The problem is that in /usr/local/lib is an acient version of mylib hence
> a call to _system_ with fails badly.
>
>
>
> Suggestions?
Read the R-admin manual (as the INSTALL file asks) and set the flags 
correctly for your setup when you install R.  In particular, read 
carefully what it says about LDFLAGS: this should not be a surprise to 
you.

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
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