Frank Harrell suggested I re-post with information about the version of R Heres's the information:> > version > _ > platform powerpc-apple-darwin6.8 > arch powerpc > os darwin6.8 > system powerpc, darwin6.8 > status > major 2 > minor 0.1 > year 2004 > month 11 > day 15 > language RHere's what happens when I try to install:> > install.packages("Hmisc") > trying URL `http://cran.r-project.org/src/contrib/PACKAGES' > Content type `text/plain; charset=iso-8859-1' length 47565 bytes > opened URL > =================================================> downloaded 46Kb > > trying URL `http://cran.r-project.org/src/contrib/Hmisc_3.0-1.tar.gz' > Content type `application/x-tar' length 453567 bytes > opened URL > =================================================> downloaded 442Kb > > Delete downloaded files (y/N)? > > The packages are in /tmp/Rtmp1911/Rinstdirfc4111 > Warning message: > Installation of package Hmisc had non-zero exit status in: > install.packages("Hmisc")Here's what the Console had to say:> * Installing *source* package 'Hmisc' ... > ** libs > g77 -fno-common -g -O2 -c cidxcn.f -o cidxcn.o > g77 -fno-common -g -O2 -c cidxcp.f -o cidxcp.o > g77 -fno-common -g -O2 -c hoeffd.f -o hoeffd.o > g77 -fno-common -g -O2 -c jacklins.f -o jacklins.o > g77 -fno-common -g -O2 -c largrec.f -o largrec.o > gcc -no-cpp-precomp > -I/Library/Frameworks/R.framework/Resources/include > -I/usr/local/include -fno-common -g -O2 -c ranksort.c -o ranksort.o > g77 -fno-common -g -O2 -c rcorr.f -o rcorr.o > g77 -fno-common -g -O2 -c wclosest.f -o wclosest.o > gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o > Hmisc.so cidxcn.o cidxcp.o hoeffd.o jacklins.o largrec.o ranksort.o > rcorr.o wclosest.o -L/usr/local/lib > -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2 > -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -lfrtbegin > -lg2c -lSystem -lcc_dynamic -framework R > ld: warning -L: directory name > (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2) does not exist > ld: warning -L: directory name > (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../..) does not > exist > ld: can't locate file for: -lfrtbegin > make: *** [Hmisc.so] Error 1 > ERROR: compilation failed for package 'Hmisc' > ** Removing > '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ > Hmisc' > ** Restoring previous > '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ > Hmisc'_____________________________ Professor Michael Kubovy University of Virginia Department of Psychology USPS: P.O.Box 400400 Charlottesville, VA 22904-4400 Parcels: Room 102 Gilmer Hall McCormick Road Charlottesville, VA 22903 Office: B011 +1-434-982-4729 Lab: B019 +1-434-982-4751 Fax: +1-434-982-4766 WWW: http://www.people.virginia.edu/~mk9y/ [[alternative text/enriched version deleted]]
On Sat, 5 Feb 2005, Michael Kubovy wrote:> Frank Harrell suggested I re-post with information about the version of > RThanks, that starts to make sense. You appear to have g77 installed, but not in the place the person who prepared the binary install of R has it. Where do you have it installed? ('whereis g77' or 'which g77' should tell you.) Then you need to alter FLIBS in R_HOME/etc/Makeconf to point to it. (You can remove -lfrtbegin from FLIBS: it is not needed: your R_HOME looks to be /Library/Frameworks/R.framework/Versions/2.0.1.) However, I believe there is a more fundamental problem: because libg2c is a static library on current MacOS X, most packages using Fortran cannot be compiled there. That's presumably the case with Hmisc, as the automated package builder is not providing a binary build. (There is supposedly a check directory on CRAN, but it is not there at present.)> > Heres's the information: >>> version >> _ >> platform powerpc-apple-darwin6.8 >> arch powerpc >> os darwin6.8 >> system powerpc, darwin6.8 >> status >> major 2 >> minor 0.1 >> year 2004 >> month 11 >> day 15 >> language R > > Here's what happens when I try to install: >>> install.packages("Hmisc") >> trying URL `http://cran.r-project.org/src/contrib/PACKAGES' >> Content type `text/plain; charset=iso-8859-1' length 47565 bytes >> opened URL >> =================================================>> downloaded 46Kb >> >> trying URL `http://cran.r-project.org/src/contrib/Hmisc_3.0-1.tar.gz' >> Content type `application/x-tar' length 453567 bytes >> opened URL >> =================================================>> downloaded 442Kb >> >> Delete downloaded files (y/N)? >> >> The packages are in /tmp/Rtmp1911/Rinstdirfc4111 >> Warning message: >> Installation of package Hmisc had non-zero exit status in: >> install.packages("Hmisc") > > Here's what the Console had to say: >> * Installing *source* package 'Hmisc' ... >> ** libs >> g77 -fno-common -g -O2 -c cidxcn.f -o cidxcn.o >> g77 -fno-common -g -O2 -c cidxcp.f -o cidxcp.o >> g77 -fno-common -g -O2 -c hoeffd.f -o hoeffd.o >> g77 -fno-common -g -O2 -c jacklins.f -o jacklins.o >> g77 -fno-common -g -O2 -c largrec.f -o largrec.o >> gcc -no-cpp-precomp >> -I/Library/Frameworks/R.framework/Resources/include >> -I/usr/local/include -fno-common -g -O2 -c ranksort.c -o ranksort.o >> g77 -fno-common -g -O2 -c rcorr.f -o rcorr.o >> g77 -fno-common -g -O2 -c wclosest.f -o wclosest.o >> gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o >> Hmisc.so cidxcn.o cidxcp.o hoeffd.o jacklins.o largrec.o ranksort.o >> rcorr.o wclosest.o -L/usr/local/lib >> -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2 >> -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -lfrtbegin >> -lg2c -lSystem -lcc_dynamic -framework R >> ld: warning -L: directory name >> (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2) does not exist >> ld: warning -L: directory name >> (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../..) does not >> exist >> ld: can't locate file for: -lfrtbegin >> make: *** [Hmisc.so] Error 1 >> ERROR: compilation failed for package 'Hmisc' >> ** Removing >> '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ >> Hmisc' >> ** Restoring previous >> '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ >> Hmisc' > > > _____________________________ > Professor Michael Kubovy > University of Virginia > Department of Psychology > USPS: P.O.Box 400400 Charlottesville, VA 22904-4400 > Parcels: Room 102 Gilmer Hall > McCormick Road Charlottesville, VA 22903 > Office: B011 +1-434-982-4729 > Lab: B019 +1-434-982-4751 > Fax: +1-434-982-4766 > WWW: http://www.people.virginia.edu/~mk9y/ > [[alternative text/enriched version deleted]] > > ______________________________________________ > R-help at stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html >-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
I had problem installing Hmisc and Dedign a couple of weeks ago,
repetitively.
It failed at the stage compiling the last help file (summary, I
remember), after long time sucking up system resource. What I did was
updated some development tools, such as glibc, gcc, automake, etc., I
can't tell which one worked for me, but eventually I managed to
compile those two packages with success. If you really want to know what
exactly development tools I have updated, I'd love to take a look at my
log files.
Hope this helps;-)
My information:
R.version
_
platform i586-pc-linux-gnu
arch i586
os linux-gnu
system i586, linux-gnu
status
major 2
minor 0.1
year 2004
month 11
day 15
language R
Jindan
On Sat, 5 Feb 2005, Michael Kubovy wrote:
> Frank Harrell suggested I re-post with information about the version of
> R
>
> Heres's the information:
> > > version
> > _
> > platform powerpc-apple-darwin6.8
> > arch powerpc
> > os darwin6.8
> > system powerpc, darwin6.8
> > status
> > major 2
> > minor 0.1
> > year 2004
> > month 11
> > day 15
> > language R
>
> Here's what happens when I try to install:
> > > install.packages("Hmisc")
> > trying URL `http://cran.r-project.org/src/contrib/PACKAGES'
> > Content type `text/plain; charset=iso-8859-1' length 47565 bytes
> > opened URL
> > =================================================> > downloaded
46Kb
> >
> > trying URL
`http://cran.r-project.org/src/contrib/Hmisc_3.0-1.tar.gz'
> > Content type `application/x-tar' length 453567 bytes
> > opened URL
> > =================================================> > downloaded
442Kb
> >
> > Delete downloaded files (y/N)?
> >
> > The packages are in /tmp/Rtmp1911/Rinstdirfc4111
> > Warning message:
> > Installation of package Hmisc had non-zero exit status in:
> > install.packages("Hmisc")
>
> Here's what the Console had to say:
> > * Installing *source* package 'Hmisc' ...
> > ** libs
> > g77 -fno-common -g -O2 -c cidxcn.f -o cidxcn.o
> > g77 -fno-common -g -O2 -c cidxcp.f -o cidxcp.o
> > g77 -fno-common -g -O2 -c hoeffd.f -o hoeffd.o
> > g77 -fno-common -g -O2 -c jacklins.f -o jacklins.o
> > g77 -fno-common -g -O2 -c largrec.f -o largrec.o
> > gcc -no-cpp-precomp
> > -I/Library/Frameworks/R.framework/Resources/include
> > -I/usr/local/include -fno-common -g -O2 -c ranksort.c -o ranksort.o
> > g77 -fno-common -g -O2 -c rcorr.f -o rcorr.o
> > g77 -fno-common -g -O2 -c wclosest.f -o wclosest.o
> > gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o
> > Hmisc.so cidxcn.o cidxcp.o hoeffd.o jacklins.o largrec.o ranksort.o
> > rcorr.o wclosest.o -L/usr/local/lib
> > -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2
> > -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -lfrtbegin
> > -lg2c -lSystem -lcc_dynamic -framework R
> > ld: warning -L: directory name
> > (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2) does not exist
> > ld: warning -L: directory name
> > (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../..) does not
> > exist
> > ld: can't locate file for: -lfrtbegin
> > make: *** [Hmisc.so] Error 1
> > ERROR: compilation failed for package 'Hmisc'
> > ** Removing
> > '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/
> > Hmisc'
> > ** Restoring previous
> > '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/
> > Hmisc'
>
>
> _____________________________
> Professor Michael Kubovy
> University of Virginia
> Department of Psychology
> USPS: P.O.Box 400400 Charlottesville, VA 22904-4400
> Parcels: Room 102 Gilmer Hall
> McCormick Road Charlottesville, VA 22903
> Office: B011 +1-434-982-4729
> Lab: B019 +1-434-982-4751
> Fax: +1-434-982-4766
> WWW: http://www.people.virginia.edu/~mk9y/
> [[alternative text/enriched version deleted]]
>
> ______________________________________________
> R-help at stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide!
http://www.R-project.org/posting-guide.html
>