Tom Van Dooren
2002-Oct-10 12:03 UTC
[R] "multivariate" mixed models with crossed random effects
Hello, I am currently analysis a dataset of chaffinch song durations. Per observed song, the durations of two parts (segments) of the song are recorded. One can assume that a random effect of bird and of song type contribute to duration variation. With songtype nested within bird, lme does well in estimating random effects of bird and songtype on durations of both parts of a song, and of the correlation between bird random effects. I coded this model as follows: modelnested<-lme(duration~part,random=list(bird=~part,songtype=~part), weights=varIdent(form=~1|part),data=data) So the mean durations are estimated per song part, I get random effects of bird and songtype, plus the correlation between random effects on both parts, and error variances are estimated separately per song part. Now it is possible to classify songs according to sonogram properties, such that songtype according to that classification is not nested anymore within bird (so different birds can sing the same song). When the songtype and bird random effects are crossed, I modelled duration of each separate part of a song as: modelcrossed<-lme(durationfirstpart~1, random=pdBlocked(list(pdIdent(~bird-1),pdIdent(~songtype-1))),data=dataseparateparts) In the case of crossed random effects,does anyone know whether it is possible to have durations of both song parts in a single model, so that I can estimate the correlation between random effects of bird or songtype on both durations, just as the nested model does? Best regards, much thanks for your help, Tom Van Dooren Section Theoretical Evolutionary Biology Leiden University The Netherlands -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._