R devel - Mar 2015 - Submit a package which use doParallel

On 05/03/2015 6:16 PM, Brian G. Peterson wrote:
> On Thu, 2015-03-05 at 18:03 -0500, Etienne Lord wrote:
>> Hi,
>>
>> I'm trying to submit my first package which depends on doParallel:
>>
>> Depends: R (>= 3.0), igraph, doParallel
> 
> add foreach to your Depends.  That should resolve the error you're
> seeing.
Please don't do that.  Use Imports.

Duncan Murdoch
> 
> 
>> Running hadley devtools: devtools::check() and devtools::release()
result
>> in no problem (no ERROR nor NOTE on Linux, Mac and Windows).
>>
>> However, when in use the devtools::build_win() command, it results in
the
>> following note:
>>
>> * checking R code for possible problems ... NOTE
>>
>> complete_network: no visible global function definition for
'%dopar%'
>> complete_network: no visible global function definition for
'%:%'
>> complete_network: no visible global function definition for
'foreach'
> 
> <...>
> 
>> 2) Installing the doParallel package "before" running any
test on windows
>> seems to remove this note. Is there any way to specify it in the
>> DESCRIPTION?
>

Thanks for the quick reply.

Adding all the dependencies of doParallel (foreach, parallel, iterators) in
the DESCRIPTION and in import statements in NAMESPACE resolved the
build_win problems. Don't know why this is required for Windows build.

Thanks again.

2015-03-05 18:22 GMT-05:00 Duncan Murdoch <murdoch.duncan at gmail.com>:
> On 05/03/2015 6:16 PM, Brian G. Peterson wrote:
> > On Thu, 2015-03-05 at 18:03 -0500, Etienne Lord wrote:
> >> Hi,
> >>
> >> I'm trying to submit my first package which depends on
doParallel:
> >>
> >> Depends: R (>= 3.0), igraph, doParallel
> >
> > add foreach to your Depends.  That should resolve the error you're
> > seeing.
>
> Please don't do that.  Use Imports.
>
> Duncan Murdoch
>
> >
> >
> >> Running hadley devtools: devtools::check() and devtools::release()
> result
> >> in no problem (no ERROR nor NOTE on Linux, Mac and Windows).
> >>
> >> However, when in use the devtools::build_win() command, it results
in
> the
> >> following note:
> >>
> >> * checking R code for possible problems ... NOTE
> >>
> >> complete_network: no visible global function definition for
'%dopar%'
> >> complete_network: no visible global function definition for
'%:%'
> >> complete_network: no visible global function definition for
'foreach'
> >
> > <...>
> >
> >> 2) Installing the doParallel package "before" running
any test on
> windows
> >> seems to remove this note. Is there any way to specify it in the
> >> DESCRIPTION?
> >
>
>

-- 
Etienne Lord
?tudiant au Doctorat en Informatique
Universit? du Qu?bec ? Montr?al
tel : 514 987-3000 ext. 4803

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On Mar 5, 2015 5:01 PM, "Etienne Lord" <m.etienne.lord at
gmail.com> wrote:
>
> Thanks for the quick reply.
>
> Adding all the dependencies of doParallel (foreach, parallel, iterators)
in
> the DESCRIPTION and in import statements in NAMESPACE resolved the
> build_win problems. Don't know why this is required for Windows build.
Most likely not a Windows specific issue,. Instead it could be because the
latter uses http://win-builder.r-project.org/ and that uses newer versions
of R than what you use locally. I'd guess you get the same NOTEs if you
test with R devel (now 3.2.0rc) locally and maybe even R 3.1.2 patched.

Henrik
>
> Thanks again.
>
> 2015-03-05 18:22 GMT-05:00 Duncan Murdoch <murdoch.duncan at
gmail.com>:
>
> > On 05/03/2015 6:16 PM, Brian G. Peterson wrote:
> > > On Thu, 2015-03-05 at 18:03 -0500, Etienne Lord wrote:
> > >> Hi,
> > >>
> > >> I'm trying to submit my first package which depends on
doParallel:
> > >>
> > >> Depends: R (>= 3.0), igraph, doParallel
> > >
> > > add foreach to your Depends.  That should resolve the error
you're
> > > seeing.
> >
> > Please don't do that.  Use Imports.
> >
> > Duncan Murdoch
> >
> > >
> > >
> > >> Running hadley devtools: devtools::check() and
devtools::release()
> > result
> > >> in no problem (no ERROR nor NOTE on Linux, Mac and Windows).
> > >>
> > >> However, when in use the devtools::build_win() command, it
results in
> > the
> > >> following note:
> > >>
> > >> * checking R code for possible problems ... NOTE
> > >>
> > >> complete_network: no visible global function definition for
'%dopar%'
> > >> complete_network: no visible global function definition for
'%:%'
> > >> complete_network: no visible global function definition for
'foreach'
> > >
> > > <...>
> > >
> > >> 2) Installing the doParallel package "before"
running any test on
> > windows
> > >> seems to remove this note. Is there any way to specify it in
the
> > >> DESCRIPTION?
> > >
> >
> >
>
>
> --
> Etienne Lord
> ?tudiant au Doctorat en Informatique
> Universit? du Qu?bec ? Montr?al
> tel : 514 987-3000 ext. 4803
>
>         [[alternative HTML version deleted]]
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
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