similar to: can't load just saved R object "ReadItem: unknown type 65"

I am unable to load a just saved R object. Get message "ReadItem: unknown type 65" I am using R-devel and the problem is reproducible after logout and restarting R. Output and sessionInfo() below. Mark > setwd("~/Genomics/Experiments.Genomic/BB01/acb.shell") > local(save(affy.object.preprocessed, file ="affy.object.preprocessed.R" )) >

Hi again, I have been playing around with the order of loading packages, and as far as I can tell, there's nothing specific with affycoretools that's causing my Rgui to crash (i.e., shuts down and the Microsoft 'please send error report' box pops up). Instead, it has something to do with the order & type of packages that are loaded that add items to the menu bar by

Hi, I am running a large number of jobs (thousands) in parallel (linux OS 64bit), R version 2.14.1 (2011-12-22), Platform: x86_64-redhat-linux-gnu (64-bit). Up to yesterday everything ran fine with jobs in several blocks (block1, block2 etc) of submission. They are sent to an LSF platform to handle the parallel submission. Today I see that only one of the blocks (the 19) has not finished

Hi, Apologies if it has already been posted. I searched the archives and couldn't find the answer to my problem. I am building a R package and while checking it with R CMD check, I get the following error, * checking whether package 'drCCA' can be installed ... ERROR Installation failed. 00install.out shows following message, ** building package indices ... Error in

I am having trouble getting an install of RCurl to work properly on a Unix server. The steps I have taken are: 1. installed cUrl from source without difficulty 2. installed RCurl from source using the command ~/R_HOME/R-devel/bin/R CMD INSTALL -l ~/R_HOME/R-devel/library ~/RCurl_0.8-0.tar.gz I received no errors during this install 3. when I go back to R and require(RCurl), I get >

I am having trouble getting an install of RCurl to work properly on a Unix server. The steps I have taken are: 1. installed cUrl from source without difficulty 2. installed RCurl from source using the command ~/R_HOME/R-devel/bin/R CMD INSTALL -l ~/R_HOME/R-devel/library ~/RCurl_0.8-0.tar.gz I received no errors during this install 3. when I go back to R and require(RCurl), I get >

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is

Hi all, I am going to be teaching a workshop next week using R and Bioconductor in one of our university's computer labs. They have recently installed R 2.4.1 for me, and I'm checking all my scripts. I just noticed that using the ?somefunction call to access the documentation for that function is not working. On my own PC, the ? call output changed between R 2.3 and 2.4; before it would

Dear all, I use at least two pc to perform my data analysis. Both are powered with R updated at the latest release (currently 2.9.0 under windows xp pro). I bring .Rdata on my portable drive and use them on any of my pc (this worked also under (k)ubuntu equipped machines). Please notice that not all my pc have the same libraries installed. If a not installed library was called in .First() I got an

Currently, I load the RData file then ls() and str(). But loading the file takes too long if the file is big. Most of the time, I only interested what the variables are in the the file and the attributes of the variables (like if it is a data.frame, matrix, what are the colnames/rownames, etc.) I'm wondering if there is any facility in R to help me avoid loading the whole file.

Dear r-devel readers, I have a pretty deep problem with package loading and unloading in the development version of the lme4 package <https://github.com/lme4/lme4>; it's not boiled down to a properly minimal example yet (this has been difficult), but I am posting anyway in the hopes that someone has ideas about how to proceed farther, since I'm nearly stumped. Apologies in advance

Hi, I am trying to install Bioconductor onto R version 2.7.0 for Windows. I installed R, then followed the instructions on http://www.bioconductor.org/download, which state that you should type the following: source("http://bioconductor.org/biocLite.R") biocLite() When I do that, I get the following error: Running biocinstall version 2.2.9 with R version 2.7.0 Your version of R

Hallo, I just installed all needed packages for my project on my PC. But I cannot load all at one time. I now want to load limma. How can I realize the following plan: I want to install for example limma inclusive all needed other sub packages (add-on). Can anyone tell me the corresponding command? Thanks, Corinna Here is the result of the command library(): Pakete in Library

Hi, I ran a program that was exhausting the (unix) server's available memory. I got a bus error and then chose to save and quit workspace (option 4). That may not have been a smart idea - when I try to use R now, I get the error message: Error in load(name, envir = .GlobalEnv) : ReadItem: unknown type 0, perhaps written by later version of R Fatal error: unable to restore saved data in

I want R to read my Microsoft Access database or maybe even a Sybase database. I installed RODBC or at least thought I did. Then I issued the following command: library(RODBC) And got Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : ReadItem: unknown type 241 In addition: Warning message: package 'RODBC' was built under R version 2.3.0 Error: package/namespace

Hi, I am trying to load the library(ks), but I am getting the following error: Loading required package: KernSmooth KernSmooth 2.22 installed Copyright M. P. Wand 1997 Loading required package: mvtnorm Loading required package: rgl Loading required package: misc3d Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : ReadItem: unknown type 241 In addition: Warning messages: 1:

I am currently using R 2.1.1 under Windows and I do not seem to be able to load the current versions of lme4/Matrix. I have run 'update.packages.' I understand this is still experimental software but I would like access to a working version. Thanks. Chuck R Output: > library(lme4) Loading required package: Matrix Error in lazyLoadDBfetch(key, datafile, compressed, envhook) :

Neither biocLite nor the GUI menus can install packages on my system. Here is relevant output: > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2 minor 11.1 year 2010 month 05 day 31 svn rev 52157 language R version.string R version 2.11.1 (2010-05-31) > source("http://bioconductor.org/biocLite.R") BioC_mirror =

Dear list-members, I have observed quite a strange problem with the date package. You will find below what I get on my machine (Ubuntu). I have been able to reproduce the error on Red Hat too. But it seems not to happen on Windows (and on some other Linux distros?). > require(date) Loading required package: date > sessionInfo() R version 2.15.2 (2012-10-26) Platform: x86_64-pc-linux-gnu

Hi, While installing precompiled packages I often get warnings like the one in the subject. I usually ignore them, but I still do not understand why windows packages are build with unreleased versions of R. Is there some way to get packages build under R-2.2.0? What are potential problems that can result from that version mismatch? My system: winXP R version: 2.2.0 Jarek Tuszynski