Gregory P. Ennis
2016-Dec-14 13:44 UTC
[CentOS] Problem with yum on CentOS Linux release 7.2.1511 (Core) with 3.10.0-327.36.3.el7.x86_64 kernel
Everyone,
I am at a loss on this problem would appreciate some guidance as to
where to start to fix it.
I noticed that my home gateway server was not being updated with the
new kernel and other software, and when I ran yum it aborted with the
following notices. I tried a yum clean all, but this did not fix the
problem. I thought the problem may be related to one of the repos, but
I have other machines in the same network that update properly. I
disabled all repos except the BASE to try to simply the problem and
still the same problem.
Any help would be appreciated.
Thanks,
Greg Ennis
Loaded plugins: aliases, changelog, fastestmirror, langpacks, product-
id, search-
??????????????: disabled-repos, subscription-manager, tmprepo, verify,
versionlock
This system is not registered with Subscription Management. You can use
subscription-manager to register.
base??????????????????????????????????????????????????????????| 3.6
kB??00:00:00?????
(1/2): base/7/x86_64/group_gz?????????????????????????????????| 155
kB??00:00:00?????
(2/2): base/7/x86_64/primary_db???????????????????????????????| 5.6
MB??00:00:01?????
Determining fastest mirrors
?* base: centos.mirror.lstn.net
Traceback (most recent call last):
? File "/usr/bin/yum", line 29, in <module>
????yummain.user_main(sys.argv[1:], exit_code=True)
? File "/usr/share/yum-cli/yummain.py", line 365, in user_main
????errcode = main(args)
? File "/usr/share/yum-cli/yummain.py", line 174, in main
????result, resultmsgs = base.doCommands()
? File "/usr/share/yum-cli/cli.py", line 573, in doCommands
????return self.yum_cli_commands[self.basecmd].doCommand(self,
self.basecmd, self.extcmds)
? File "/usr/share/yum-cli/yumcommands.py", line 500, in doCommand
????ret = base.updatePkgs(extcmds, update_to=(basecmd == 'update-to'))
? File "/usr/share/yum-cli/cli.py", line 1015, in updatePkgs
????self.update()
? File "/usr/lib/python2.7/site-packages/yum/__init__.py", line 5114,
in update
????tx_return.extend(self.update(po=new))
? File "/usr/lib/python2.7/site-packages/yum/__init__.py", line 5328,
in update
????available_pkg, updated_pkg)
? File "/usr/lib/python2.7/site-packages/yum/__init__.py", line 5033,
in _add_up_txmbr
????txmbr = self.tsInfo.addUpdate(upkg, ipkg)
? File "/usr/lib/python2.7/site-packages/yum/transactioninfo.py", line
518, in addUpdate
????self.add(txmbr)
? File "/usr/lib/python2.7/site-packages/yum/transactioninfo.py", line
289, in add
????self.addUpdated(oldpo, txmember.po)
? File "/usr/lib/python2.7/site-packages/yum/transactioninfo.py", line
547, in addUpdated
????txmbr = TransactionMember(po)
? File "/usr/lib/python2.7/site-packages/yum/transactioninfo.py", line
830, in __init__
????po.yumdb_info.get('from_repo')
? File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1946,
in
get
????res = self._read(attr)
? File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1861,
in
_read
????info = misc.stat_f(fn, ignore_EACCES=True)
? File "/usr/lib/python2.7/site-packages/yum/misc.py", line 962, in
stat_f
????return os.stat(filename)
OSError: [Errno 5] Input/output error:
'/var/lib/yum/yumdb/f/27ef8f508b150c2162f1bdcb1bc41713836b88ee-fence-
agents-ipdu-4.0.11-27.el7_2.9-x86_64/from_repo'
Alexander Dalloz
2016-Dec-14 17:25 UTC
[CentOS] Problem with yum on CentOS Linux release 7.2.1511 (Core) with 3.10.0-327.36.3.el7.x86_64 kernel
Am 14.12.2016 um 14:44 schrieb Gregory P. Ennis:> Everyone, > > I am at a loss on this problem would appreciate some guidance as to > where to start to fix it. > > I noticed that my home gateway server was not being updated with the > new kernel and other software, and when I ran yum it aborted with the > following notices. I tried a yum clean all, but this did not fix the > problem. I thought the problem may be related to one of the repos, but > I have other machines in the same network that update properly. I > disabled all repos except the BASE to try to simply the problem and > still the same problem. > > Any help would be appreciated. > > Thanks, > > Greg Ennis > > > Loaded plugins: aliases, changelog, fastestmirror, langpacks, product- > id, search- > : disabled-repos, subscription-manager, tmprepo, verify, > versionlock > This system is not registered with Subscription Management. You can use > subscription-manager to register. > base | 3.6 > kB 00:00:00 > (1/2): base/7/x86_64/group_gz | 155 > kB 00:00:00 > (2/2): base/7/x86_64/primary_db | 5.6 > MB 00:00:01 > Determining fastest mirrors > * base: centos.mirror.lstn.net > Traceback (most recent call last):[ ...> OSError: [Errno 5] Input/output error: > '/var/lib/yum/yumdb/f/27ef8f508b150c2162f1bdcb1bc41713836b88ee-fence- > agents-ipdu-4.0.11-27.el7_2.9-x86_64/from_repo'Such an I/O error indicates either a phyisical problem (storage broken) or filesystem full or read-only. Do other opertions besides a "yum update" work properly? Specificly do disk operations succeed? Do you see any error messages in /var/log/messages respectively by "journalctl -b"? Regards Alexander
Gregory P. Ennis
2016-Dec-14 19:11 UTC
[CentOS] Problem with yum on CentOS Linux release 7.2.1511 (Core) with 3.10.0-327.36.3.el7.x86_64 kernel
Am 14.12.2016 um 14:44 schrieb Gregory P. Ennis:> Everyone, > > I am at a loss on this problem would appreciate some guidance as to > where to start to fix it. > > I noticed that my home gateway server was not being updated with the > new kernel and other software, and when I ran yum it aborted with the > following notices. I tried a yum clean all, but this did not fix the > problem. I thought the problem may be related to one of the repos, but > I have other machines in the same network that update properly. I > disabled all repos except the BASE to try to simply the problem and > still the same problem. > > Any help would be appreciated. > > Thanks, > > Greg Ennis > > > Loaded plugins: aliases, changelog, fastestmirror, langpacks, product- > id, search- > : disabled-repos, subscription-manager, tmprepo, verify, > versionlock > This system is not registered with Subscription Management. You can use > subscription-manager to register. > base | 3.6 > kB 00:00:00 > (1/2): base/7/x86_64/group_gz | 155 > kB 00:00:00 > (2/2): base/7/x86_64/primary_db | 5.6 > MB 00:00:01 > Determining fastest mirrors > * base: centos.mirror.lstn.net > Traceback (most recent call last):[ ...> OSError: [Errno 5] Input/output error: > '/var/lib/yum/yumdb/f/27ef8f508b150c2162f1bdcb1bc41713836b88ee-fence- > agents-ipdu-4.0.11-27.el7_2.9-x86_64/from_repo'Such an I/O error indicates either a phyisical problem (storage broken) or filesystem full or read-only. Do other opertions besides a "yum update" work properly? Specificly do disk operations succeed? Do you see any error messages in /var/log/messages respectively by "journalctl -b"? Regards Alexander -------------------------------- Alexander, Thanks for your assistance. I have not identified any problems with the drive, and have no difficulty reading or writing from the disc. E-mail is going in and out without a problem. I have not identified any other problem with the machine. The disc space seems ok to me, here is the result of df> [root at localhost ~]# df -v > Filesystem 1K-blocks Used Available Use% Mounted on > /dev/mapper/centos_hmwk-root 52403200 12425172 39978028 24% / > devtmpfs 863512 0 863512 0% /dev > tmpfs 879348 0 879348 0% /dev/shm > tmpfs 879348 58216 821132 7% /run > tmpfs 879348 0 879348 0% /sys/fs/cgroup > /dev/mapper/centos_hmwk-u0 1023500000 571429000 452071000 56% /u0 > /dev/mapper/centos_hmwk-u1 1023500000 160669800 862830200 16% /u1 > /dev/mapper/centos_hmwk-home 52403200 96148 52307052 1% /home > /dev/mapper/centos_hmwk-u2 1023500000 310892544 712607456 31% /u2 > /dev/mapper/centos_hmwk-u3 213371092 34736 213336356 1% /u3 > /dev/mapper/centos_hmwk-u 511750000 66208428 445541572 13% /u > /dev/sda2 508588 366236 142352 73% /boot > /dev/sda1 204580 9640 194940 5% /boot/efi > /dev/sdd1 2884105400 53040472 2684536980 2% /media/usbdrive > tmpfs 175872 0 175872 0% /run/user/0
Gregory P. Ennis
2016-Dec-15 23:36 UTC
[CentOS] Problem with yum on CentOS Linux release 7.2.1511 (Core) with 3.10.0-327.36.3.el7.x86_64 kernel
Am 14.12.2016 um 14:44 schrieb Gregory P. Ennis:> Everyone, > > I am at a loss on this problem would appreciate some guidance as to > where to start to fix it. > > I noticed that my home gateway server was not being updated with the > new kernel and other software, and when I ran yum it aborted with the > following notices.??I tried a yum clean all, but this did not fix the > problem.??I thought the problem may be related to one of the repos, > but > I have other machines in the same network that update properly.??I > disabled all repos except the BASE to try to simply the problem and > still the same problem. > > Any help would be appreciated. > > Thanks, > > Greg Ennis > > > Loaded plugins: aliases, changelog, fastestmirror, langpacks, > product- > id, search- > ??????????????: disabled-repos, subscription-manager, tmprepo, > verify, > versionlock > This system is not registered with Subscription Management. You can > use > subscription-manager to register. > base??????????????????????????????????????????????????????????| 3.6 > kB??00:00:00 > (1/2): base/7/x86_64/group_gz?????????????????????????????????| 155 > kB??00:00:00 > (2/2): base/7/x86_64/primary_db???????????????????????????????| 5.6 > MB??00:00:01 > Determining fastest mirrors > ?* base: centos.mirror.lstn.net > Traceback (most recent call last):[ ...> OSError: [Errno 5] Input/output error: > '/var/lib/yum/yumdb/f/27ef8f508b150c2162f1bdcb1bc41713836b88ee-fence- > agents-ipdu-4.0.11-27.el7_2.9-x86_64/from_repo'Such an I/O error indicates either a phyisical problem (storage broken)? or filesystem full or read-only. Do other opertions besides a "yum update" work properly? Specificly do? disk operations succeed? Do you see any error messages in /var/log/messages respectively by? "journalctl -b"? Regards Alexander ---------------------------------------------------------------------- Alexander, After monitoring journalctl -b output, I am getting the following error messages. I am not sure what these error messages mean, but it causes me to believe you are correct that I have a disc problem? Is that correct? Greg Dec 15 17:20:06 HmWk smartd[961]: Device: /dev/sda [SAT], 220 Currently unreadable (pending) sectors Dec 15 17:20:06 HmWk smartd[961]: Device: /dev/sda [SAT], 30 Offline uncorrectable sectors Dec 15 17:24:22 HmWk kernel: ata1.00: exception Emask 0x0 SAct 0x400000 SErr 0x40000 action 0x0 Dec 15 17:24:22 HmWk kernel: ata1.00: irq_stat 0x40000008 Dec 15 17:24:22 HmWk kernel: ata1: SError: { CommWake } Dec 15 17:24:22 HmWk kernel: ata1.00: failed command: READ FPDMA QUEUED Dec 15 17:24:22 HmWk kernel: ata1.00: cmd 60/08:b0:28:c4:cc/00:00:04:00:00/40 tag 22 ncq 4096 in ????????????????????????????????????????????????res 41/40:00:28:c4:cc/00:00:04:00:00/40 Emask 0x409 (media error) <F> Dec 15 17:24:22 HmWk kernel: ata1.00: status: { DRDY ERR } Dec 15 17:24:22 HmWk kernel: ata1.00: error: { UNC } Dec 15 17:24:22 HmWk kernel: blk_update_request: I/O error, dev sda, sector 80528424 Dec 15 17:24:22 HmWk kernel: ata1: EH complete Dec 15 17:24:22 HmWk kernel: XFS (dm-1): metadata I/O error: block 0x4b6d428 ("xfs_trans_read_buf_map") error 5 numblks 8