R help - Jan 2009 - using Sweave with a master file that has several iputted .tex files

Suppose I have a Master.Rnw file that looks something like this:


\documentclass[12pt]{mypaper}
\usepackage[margin=1in]{geometry}
\usepackage{setspace}
\usepackage{url}
\usepackage{indentfirst}
\usepackage{fancyhdr}
\usepackage{Sweave}
\pagestyle{fancy}
\lhead{sonographic rectal diameter and ADHD}
\rhead{ }
\usepackage{abbrevs}
%\usepackage{natbib}
%\usepackage{apacite}
\bibliographystyle{StandardMedicalJournal}
%\bibpunct{}{}{,}{}{}{}

\usepackage{multirow}
\usepackage{outlines}

\begin{document}

\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/SpecificAims}

\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/BackgroundAndSignificance}

\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/PreliminaryStudies}

\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/ResearchDesignAndMethods}

...abbrevieated...

\end{document}

Some of the inputted files contain R code, enclosed in
<<chunkname>>and @.  Several of them don't contain any R code.

Can I compile the whole document with Sweave("Master.Rnw") ?

Thanks.

--Chris

-- 
Christopher W. Ryan, MD
SUNY Upstate Medical University Clinical Campus at Binghamton
40 Arch Street, Johnson City, NY  13790
cryanatbinghamtondotedu
PGP public keys available at http://home.stny.rr.com/ryancw/

"If you want to build a ship, don't drum up the men to gather wood,
divide the work and give orders. Instead, teach them to yearn for the
vast and endless sea."  [Antoine de St. Exupery]

Use the "include" function in LaTeX. 



"Christopher W. Ryan" <cryan@binghamton.edu> 
Sent by: r-help-bounces@r-project.org
01/27/2009 12:48 PM

To
r-help@stat.math.ethz.ch
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Subject
[R] using Sweave with a master file that has several iputted .tex files






Suppose I have a Master.Rnw file that looks something like this:


\documentclass[12pt]{mypaper}
\usepackage[margin=1in]{geometry}
\usepackage{setspace}
\usepackage{url}
\usepackage{indentfirst}
\usepackage{fancyhdr}
\usepackage{Sweave}
\pagestyle{fancy}
\lhead{sonographic rectal diameter and ADHD}
\rhead{ }
\usepackage{abbrevs}
%\usepackage{natbib}
%\usepackage{apacite}
\bibliographystyle{StandardMedicalJournal}
%\bibpunct{}{}{,}{}{}{}

\usepackage{multirow}
\usepackage{outlines}

\begin{document}

\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/SpecificAims}

\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/BackgroundAndSignificance}

\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/PreliminaryStudies}

\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/ResearchDesignAndMethods}

...abbrevieated...

\end{document}

Some of the inputted files contain R code, enclosed in
<<chunkname>>and @.  Several of them don't contain any R code.

Can I compile the whole document with Sweave("Master.Rnw") ?

Thanks.

--Chris

-- 
Christopher W. Ryan, MD
SUNY Upstate Medical University Clinical Campus at Binghamton
40 Arch Street, Johnson City, NY  13790
cryanatbinghamtondotedu
PGP public keys available at http://home.stny.rr.com/ryancw/

"If you want to build a ship, don't drum up the men to gather wood,
divide the work and give orders. Instead, teach them to yearn for the
vast and endless sea."  [Antoine de St. Exupery]

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	[[alternative HTML version deleted]]

On 1/27/2009 12:48 PM, Christopher W. Ryan wrote:
> Suppose I have a Master.Rnw file that looks something like this:
> 
> 
> \documentclass[12pt]{mypaper}
> \usepackage[margin=1in]{geometry}
> \usepackage{setspace}
> \usepackage{url}
> \usepackage{indentfirst}
> \usepackage{fancyhdr}
> \usepackage{Sweave}
> \pagestyle{fancy}
> \lhead{sonographic rectal diameter and ADHD}
> \rhead{ }
> \usepackage{abbrevs}
> %\usepackage{natbib}
> %\usepackage{apacite}
> \bibliographystyle{StandardMedicalJournal}
> %\bibpunct{}{}{,}{}{}{}
> 
> \usepackage{multirow}
> \usepackage{outlines}
> 
> \begin{document}
> 
>
\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/SpecificAims}
> 
>
\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/BackgroundAndSignificance}
> 
>
\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/PreliminaryStudies}
> 
>
\input{C:/DATA/SCHOLAR/ADHDConstipation/SonographicStudy/PAR06180/ResearchDesignAndMethods}
> 
> ...abbrevieated...
> 
> \end{document}
> 
> Some of the inputted files contain R code, enclosed in
<<chunkname>>> and @.  Several of them don't contain any R
code.
> 
> Can I compile the whole document with Sweave("Master.Rnw") ?
No, it will only process the file you give it.  There are various 
"makefiles" around that handle dependencies, running Sweave on each 
changed Rnw file before running latex on the master file.  For example, see

http://tolstoy.newcastle.edu.au/R/e2/help/06/11/4891.html

(which I haven't tried, I just googled for Sweave makefile).

Duncan Murdoch