R help - Aug 2007 - warning messages in grid or lattice give that I can't debug

The messages are visible in 2.6.0dev
The same commands in 2.4.1 work without warning messages.
I am using the HH_1.18-1 from R_2.4.1 with both R versions and not
the current HH_2.1-3

version$version.string
installed.packages()[c("grid","lattice", "HH"),3]
## library(HH)
library(lattice, lib.loc="C:/PROGRA~1/R/R-2.4.1/library")
hotdog <- read.table(hh("datasets/hotdog.dat"), header=TRUE)
ancova(Sodium ~ Calories + Type, data=hotdog)


the messages in R_2.6.0dev are
Warning messages:
1: In grid.Call.graphics("L_points", x$x, x$y, x$pch, x$size) :
  supplied color is not numeric nor character
...
6: In grid.Call.graphics("L_points", x$x, x$y, x$pch, x$size) :
  supplied color is not numeric nor character


My guess is that these warnings are a response to a change in grid or lattice
in 2.5.0.  I attempted to trace these with 
options(warn=2)
options(error=recover)
without success.

Debugging suggestions or revised programming suggestions would be appreciated.

Rich

Richard M. Heiberger wrote:
> The messages are visible in 2.6.0dev
> The same commands in 2.4.1 work without warning messages.
> I am using the HH_1.18-1 from R_2.4.1 with both R versions and not
> the current HH_2.1-3
> 
> version$version.string
> installed.packages()[c("grid","lattice",
"HH"),3]
> ## library(HH)
> library(lattice, lib.loc="C:/PROGRA~1/R/R-2.4.1/library")
It is essential not to use a lattice version designed for R-2.4.1 with 
R-devel... And I don't see a reason, and in some cases, switching to 
another major version of R requires recompiling of packages anyway.

Uwe Ligges




> hotdog <- read.table(hh("datasets/hotdog.dat"), header=TRUE)
> ancova(Sodium ~ Calories + Type, data=hotdog)
> 
> 
> the messages in R_2.6.0dev are
> Warning messages:
> 1: In grid.Call.graphics("L_points", x$x, x$y, x$pch, x$size) :
>   supplied color is not numeric nor character
> ...
> 6: In grid.Call.graphics("L_points", x$x, x$y, x$pch, x$size) :
>   supplied color is not numeric nor character
> 
> 
> My guess is that these warnings are a response to a change in grid or
lattice
> in 2.5.0.  I attempted to trace these with 
> options(warn=2)
> options(error=recover)
> without success.
> 
> Debugging suggestions or revised programming suggestions would be
appreciated.
> 
> Rich
> 
> ______________________________________________
> R-help at stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

Uwe Ligges wrote:
> It is essential not to use a lattice version designed for R-2.4.1 with 
> R-devel... And I don't see a reason, and in some cases, switching to 
> another major version of R requires recompiling of packages anyway.
The warnings first appeared in 2.6.0dev when I recompiled my package
for 2.6.0dev.   The warnings are not detected by R CMD CHECK and still
appear in HH_2.1-3 (not yet on CRAN) after I repaired everything the
R CMD CHECK does find.

I backed up to the 2.4.1 compilation of HH along with the complete
2.6.0dev environment, including lattice and grid, to confirm that I had
not introduced new errors.  I believe the warnings come from a change made
to R, probably in lattice or grid, that are not detected by R CMD CHECK.

Uwe is correct that the older lattice and grid will not load with the newer
R.

Rich

On 8/2/07, Richard M. Heiberger <rmh at temple.edu>
wrote:
> The messages are visible in 2.6.0dev
> The same commands in 2.4.1 work without warning messages.
> I am using the HH_1.18-1 from R_2.4.1 with both R versions and not
> the current HH_2.1-3
>
> version$version.string
> installed.packages()[c("grid","lattice",
"HH"),3]
> ## library(HH)
> library(lattice, lib.loc="C:/PROGRA~1/R/R-2.4.1/library")
> hotdog <- read.table(hh("datasets/hotdog.dat"), header=TRUE)
> ancova(Sodium ~ Calories + Type, data=hotdog)
>
>
> the messages in R_2.6.0dev are
> Warning messages:
> 1: In grid.Call.graphics("L_points", x$x, x$y, x$pch, x$size) :
>   supplied color is not numeric nor character
> ...
> 6: In grid.Call.graphics("L_points", x$x, x$y, x$pch, x$size) :
>   supplied color is not numeric nor character
>
>
> My guess is that these warnings are a response to a change in grid or
lattice
> in 2.5.0.  I attempted to trace these with
> options(warn=2)
> options(error=recover)
> without success.
>
> Debugging suggestions or revised programming suggestions would be
appreciated.
Well, options(warn=2) traces the problem to the legend drawing code,
and going from there, I get
> str(trellis.last.object()$legend$right$args$key$points)
'data.frame':   3 obs. of  6 variables:
 $ alpha: num  1 1 1
 $ cex  : num  0.8 0.8 0.8
 $ col  : chr  "#0080ff" "#ff00ff" "darkgreen"
 $ font : num  1 1 1
 $ pch  : num  1 1 1
 $ fill : Factor w/ 1 level "transparent": 1 1 1

Note that the last component 'fill' is a factor (which is "not
numeric
nor character", at least in a zen kind of way). I presume you are
somehow protecting 'col' from becoming a factor, and that does not
translate to 'fill'.

This behaviour (of HH) is not new, and I believe you will see the same
output as above in R 2.4. What's new is that 'fill' used to be
ignored
by draw.key(), which was a bug in lattice that has now been fixed.

-Deepayan

Thanks Deepayan.

Does that translate that I don't have to do anything else,
and that I can submit the package in its present state to CRAN?

Rich