1)I installed R-1.7.0 in Sgi machine(irix6.5).I installed all the
bioconductor packages too.
After that i did put all my >cel files under one directory and then move
into that directory and Start R.Then i gave library(affy) to load it.
Welcome to Bioconductor
To view some introductory material.........
Simply type.......
Creating a new generic function for "summary" in package
Biobase
{1} TRUE
My question is did it reall yy load the package affy.
2)When i write data <-ReadAffy()
it gives these:
1: the condition has length > 1 and only the first element will be used in:
if (dim(intensity(cel)) != dim.intensity) stop(paste("CEL file dimension
mismatch !\n(file",
My question is how can i make it work to read my .cel file.
I am sending you an example .cel file
[CEL]
Version=3
[HEADER]
Cols=536
Rows=536
TotalX=536
TotalY=536
OffsetX=0
OffsetY=0
GridCornerUL=237 234
GridCornerUR=4492 243
GridCornerLR=4490 4508
GridCornerLL=235 4499
Axis-invertX=0
AxisInvertY=0
swapXY=0
DatHeader=[73..46225] MG2000062256AA:CLS=4733 RWS=4733 XIN=3 YIN=3 VE=17
2.0 06/22/ 0 11:15:55 GridVerify=Success Hu6800.1sq
6
Algorithm=Percentile
AlgorithmParameters=Percentile:75;CellMargin:2;OutlierHigh:1.500;OutlierLow:1.004
[INTENSITY]
NumberCells=287296
CellHeader=X Y MEAN STDV NPIXELS
0 0 1447.3 294.2 36
1 0 34282.8 4017.5 36
2 0 1528.0 244.9 36
3 0 33889.3 4679.7 36
4 0 1073.5 211.4 36
5 0 1493.8 235.2 36
6 0 26558.8 5903.9 36
7 0 1557.5 259.3 36
8 0 25951.8 3178.6 30
9 0 1497.0 292.3 36
10 0 26122.8 3989.7 36
11 0 1577.3 271.9 36
12 0 25029.8 4386.5 36
13 0 1454.8 229.0 36
14 0 25128.5 5666.1 36
15 0 1602.0 242.9 36
16 0 26180.0 6859.9 36
17 0 1652.8 304.7 36
18 0 26311.8 7985.2 36
19 0 1655.0 295.9 36
20
3)when i try to load tcl/tk it says:
Loading required package: tcltk
Error in firstlib(which.lib.loc, package) :
Tcl/Tk support is not available on this syError: syntax error
Please do help me out.
Thanks
RInku
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