Hi Ansley
It looks good to me but I did not run the analysis as I am too lazy to install
"indicspecies". The inclusion of the raw data is a great help.
John Kane
Kingston ON Canada
-----Original Message-----
From: daily.puja at gmail.com
Sent: Tue, 19 Apr 2016 08:16:54 -0400
To: jrkrideau at inbox.com
Subject: Re: [R] Indicator Species analysis; trouble with multipatt
Thanks for the replies.
I have fixed the problem.? I only need to reorganized my data.? Now my question
is about asking questions correctly.? I hope I've got it.? Please find the
script attached here.
R Version 3.2.2
I am looking for indicator species with Indicspecies package.? After running the
function multipatt, I get the following error:
Error in is.factor(x) : object 'groups1' not found
**Is this?reproducibility satisfactory?? I fixed the problem by reorganizing my
csv file.? I was trying to be?efficient?when making my groups?and that was
causing the trouble.
Thanks.
On Tue, Apr 19, 2016 at 6:47 AM, John Kane <jrkrideau at inbox.com> wrote:
Hi Ansely,
As Jim points out we really need some sample data to go with the code.
Have a look at ?dput which is the best way to supply sample data here or have a
look at
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example
[http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example]
and/or http://adv-r.had.co.nz/Reproducibility.html
[http://adv-r.had.co.nz/Reproducibility.html] for some general suggestions on
asking questions here---including discussions of using dput()
John Kane
Kingston ON Canada
> -----Original Message-----
> From: daily.puja at gmail.com
> Sent: Mon, 18 Apr 2016 16:33:54 -0400
> To: r-help at r-project.org
> Subject: [R] Indicator Species analysis; trouble with multipatt
>
> Hello,
>
> *Error in tx? %*% comb : non-conformable arguments*
>
> Suggestions greatly appreciated.? I am a beginner and this is my first
> time
> posting.
>
> I would like to get the summary for indicator species analysis, using
> package indicspecies with multipatt.? I am getting errors, I believe, do
> to
> my data organization.? After reorganizing and reorganizing, nothing has
> helped.
>
>> data<- read.csv(file="Data1.csv", header=TRUE,
row.names=1, sep=",")
>> ap<-data[c(1:24, 1:81)]
>> groups<-c(rep(1:4,6))
>> indval<- multipatt(ap, groups, control = how(nperm=999))
> *Error in tx? %*% comb : non-conformable arguments*
>
>
>
> --
> Ansley Silva
>
>
> *"The clearest way into the Universe is through a forest
wilderness."
> John
> Muir*
>
>
> *Graduate Research Assistant*
> ______________________________________________
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[https://stat.ethz.ch/mailman/listinfo/r-help]
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
[http://www.R-project.org/posting-guide.html]
> and provide commented, minimal, self-contained, reproducible code.
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_
_
_"The clearest way into the Universe is through a forest wilderness."
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__
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