Suggest you ask this question on r-sig-mac.
And of course, searching the archives of that list might turn something up.
-Don
--
Don MacQueen
Lawrence Livermore National Laboratory
7000 East Ave., L-627
Livermore, CA 94550
925-423-1062
From: Rory Kirchner
<rory.kirchner@gmail.com<mailto:rory.kirchner@gmail.com>>
Date: Thursday, April 17, 2014 11:42 AM
To: "r-help@r-project.org<mailto:r-help@r-project.org>"
<r-help@r-project.org<mailto:r-help@r-project.org>>
Subject: [R] Installation issues on OSX
Hi everyone,
I�m having some troubles installing R 3.1.0 on OSX from source using the
homebrew package and was wondering if any OSX users had any ideas. I posted an
issue on homebrew-science but the maintainer suggested it might be an error
upstream, so I am reposting it here. Here is the error, it fails when building
the package indices:
*** installing help indices
** building package indices
Loading required package: Matrix
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/private/tmp/r-SjCB/R-3.0.3/library/Matrix/libs/Matrix.so':
dlopen(/private/tmp/r-SjCB/R-3.0.3/library/Matrix/libs/Matrix.so, 6): Symbol
not found: _cholmod_aat
Referenced from: /private/tmp/r-SjCB/R-3.0.3/library/Matrix/libs/Matrix.so
Expected in: flat namespace
in /private/tmp/r-SjCB/R-3.0.3/library/Matrix/libs/Matrix.so
Error : require(Matrix) is not TRUE
ERROR: installing package indices failed
* removing �/private/tmp/r-SjCB/R-3.0.3/library/Matrix�
make[2]: *** [Matrix.ts] Error 1
make[1]: *** [recommended-packages] Error 2
make: *** [stamp-recommended] Error 2
Here is my environment:
CPU: 8-core 64-bit ivybridge
OS X: 10.9.2-x86_64
Xcode: 5.1.1
Google searching for _cholmod_aat only shows up with the two issues related to
this issue.
Here is a gist to the entire error log, pinned to the line number where the
error appears:
https://gist.github.com/anonymous/11002635#file-02-make-L1711
And a link to the discussion thread regarding this error on homebrew-science, it
has been persisting since 3.0.2:
https://github.com/Homebrew/homebrew-science/issues/740
Thanks!
Best,
Rory
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