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Michael Stauffer

2013-Oct-25 01:33 UTC

[R] 'yum install R' failing with tcl/tk issue

Hi,

I'm trying to install R on CentOS 6.4.

Following some instructions online, I've done this:

rpm -Uvh
http://download.fedoraproject.org/pub/epel/6/i386/epel-release-6-8.noarch.rpm

yum install R

But yum fails, with this (full output below):

Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
           Requires: libtcl8.4.so()(64bit)
Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
           Requires: libtk8.4.so()(64bit)

I have tcl/tk 8.5 already installed. Does anyone have any suggestion?
Thanks!

Full output:

[root@picsl-cluster ~]# yum install R
Repository base is listed more than once in the configuration
Rocks-6.1
                          | 1.9 kB     00:00
base
                           | 3.7 kB     00:00
Setting up Install Process
Resolving Dependencies
--> Running transaction check
---> Package R.x86_64 0:2.10.0-2.el5 will be installed
--> Processing Dependency: libRmath-devel = 2.10.0-2.el5 for package:
R-2.10.0-2.el5.x86_64
--> Processing Dependency: R-devel = 2.10.0-2.el5 for package:
R-2.10.0-2.el5.x86_64
--> Running transaction check
---> Package R-devel.x86_64 0:2.10.0-2.el5 will be installed
--> Processing Dependency: R-core = 2.10.0-2.el5 for package:
R-devel-2.10.0-2.el5.x86_64
---> Package libRmath-devel.x86_64 0:2.10.0-2.el5 will be installed
--> Processing Dependency: libRmath = 2.10.0-2.el5 for package:
libRmath-devel-2.10.0-2.el5.x86_64
--> Running transaction check
---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
--> Processing Dependency: libtk8.4.so()(64bit) for package:
R-core-2.10.0-2.el5.x86_64
--> Processing Dependency: libtcl8.4.so()(64bit) for package:
R-core-2.10.0-2.el5.x86_64
--> Processing Dependency: libgfortran.so.1()(64bit) for package:
R-core-2.10.0-2.el5.x86_64
---> Package libRmath.x86_64 0:2.10.0-2.el5 will be installed
--> Running transaction check
---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
--> Processing Dependency: libtk8.4.so()(64bit) for package:
R-core-2.10.0-2.el5.x86_64
--> Processing Dependency: libtcl8.4.so()(64bit) for package:
R-core-2.10.0-2.el5.x86_64
---> Package compat-libgfortran-41.x86_64 0:4.1.2-39.el6 will be installed
--> Finished Dependency Resolution
Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
           Requires: libtcl8.4.so()(64bit)
Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
           Requires: libtk8.4.so()(64bit)
 You could try using --skip-broken to work around the problem
** Found 57 pre-existing rpmdb problem(s), 'yum check' output follows:
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Client)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Core)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Delta)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Ra)
1:guestfish-1.7.17-26.el6.x86_64 has missing requires of libguestfs =
('1',
'1.7.17', '26.el6')
opt-perl-AcePerl-1.92-0.el6.x86_64 has missing requires of
perl(Ace::Browser::LocalSiteDefs)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Apache::DBI)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::ASN1::EntrezGene)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Expression::Contact)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Expression::DataSet)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Expression::Platform)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Expression::Sample)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::Factory)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::Forest::Tree)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::IO)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::Matrices)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::Matrices::Datum)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Bio::Phylo::Matrices::Matrix)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Convert::Binary::C)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(DBD::Pg)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(PostScript::TextBlock)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Test::Exception)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
perl(Test::Warn)
opt-perl-BioPerl-DB-1.006900-0.el6.noarch has missing requires of
perl(DBD::Oracle)
opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
perl(Bio::Tools::Run::StandAloneBlastPlus::BlastMethods)
opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
perl(Bio::Tools::Run::WrapperBase::CommandExts)
opt-perl-Cache-Cache-1.06-0.el6.noarch has missing requires of
perl(IPC::ShareLite)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Handle)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Select)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of
perl(RPC::PlClient)>= ('0', '0.2000', None)opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of
perl(RPC::PlServer)>= ('0', '0.2001', None)opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Win32::ODBC)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Label)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Tree)
opt-perl-Digest-Perl-MD5-1.8-0.el6.noarch has missing requires of
/usr/bin/false
opt-perl-HTTP-Cookies-6.01-0.el6.noarch has missing requires of perl(Win32)
opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
perl(Win32::Process)
opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
perl(Win32API::File)
opt-perl-MLDBM-2.04-0.el6.noarch has missing requires of perl(FreezeThaw)
opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
perl(Moose::Conflicts)
opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
perl(Moose::Error::Util)
opt-perl-Package-Stash-0.33-0.el6.noarch has missing requires of
perl(Package::Stash::Conflicts)
opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
perl(MIME::Lite)
opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
perl(SOAP::Transport::TCP)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
perl(Jcode)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
perl(Spreadsheet::WriteExcel)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
perl(Unicode::Map)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
perl(XML::SAX::PurePerl::DTDDecls)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
perl(XML::SAX::PurePerl::DocType)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
perl(XML::SAX::PurePerl::EncodingDetect)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
perl(XML::SAX::PurePerl::XMLDecl)
opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base)
>('0', '0.47', None)
opt-perl-YAML-0.84-0.el6.noarch has missing requires of
perl(Test::Base::Filter)
opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
perl(Authen::NTLM)
opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
perl(HTTP::GHTTP)

	[[alternative HTML version deleted]]

Pascal Oettli

2013-Oct-25 05:35 UTC

head link

[R] 'yum install R' failing with tcl/tk issue

Hello,

Do you have headers installed (generally tcl-devel and tk-devel)?

Regards,
Pascal


On 25 October 2013 10:33, Michael Stauffer <mgstauff at gmail.com>
wrote:> Hi,
>
> I'm trying to install R on CentOS 6.4.
>
> Following some instructions online, I've done this:
>
> rpm -Uvh
>
http://download.fedoraproject.org/pub/epel/6/i386/epel-release-6-8.noarch.rpm
>
> yum install R
>
> But yum fails, with this (full output below):
>
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>            Requires: libtcl8.4.so()(64bit)
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>            Requires: libtk8.4.so()(64bit)
>
> I have tcl/tk 8.5 already installed. Does anyone have any suggestion?
> Thanks!
>
> Full output:
>
> [root at picsl-cluster ~]# yum install R
> Repository base is listed more than once in the configuration
> Rocks-6.1
>                           | 1.9 kB     00:00
> base
>                            | 3.7 kB     00:00
> Setting up Install Process
> Resolving Dependencies
> --> Running transaction check
> ---> Package R.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libRmath-devel = 2.10.0-2.el5 for package:
> R-2.10.0-2.el5.x86_64
> --> Processing Dependency: R-devel = 2.10.0-2.el5 for package:
> R-2.10.0-2.el5.x86_64
> --> Running transaction check
> ---> Package R-devel.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: R-core = 2.10.0-2.el5 for package:
> R-devel-2.10.0-2.el5.x86_64
> ---> Package libRmath-devel.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libRmath = 2.10.0-2.el5 for package:
> libRmath-devel-2.10.0-2.el5.x86_64
> --> Running transaction check
> ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libtk8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> --> Processing Dependency: libtcl8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> --> Processing Dependency: libgfortran.so.1()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> ---> Package libRmath.x86_64 0:2.10.0-2.el5 will be installed
> --> Running transaction check
> ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libtk8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> --> Processing Dependency: libtcl8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> ---> Package compat-libgfortran-41.x86_64 0:4.1.2-39.el6 will be
installed
> --> Finished Dependency Resolution
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>            Requires: libtcl8.4.so()(64bit)
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>            Requires: libtk8.4.so()(64bit)
>  You could try using --skip-broken to work around the problem
> ** Found 57 pre-existing rpmdb problem(s), 'yum check' output
follows:
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Client)
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Core)
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Delta)
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Ra)
> 1:guestfish-1.7.17-26.el6.x86_64 has missing requires of libguestfs =
('1',
> '1.7.17', '26.el6')
> opt-perl-AcePerl-1.92-0.el6.x86_64 has missing requires of
> perl(Ace::Browser::LocalSiteDefs)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Apache::DBI)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::ASN1::EntrezGene)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::Contact)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::DataSet)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::Platform)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::Sample)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Factory)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Forest::Tree)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::IO)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Matrices)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Matrices::Datum)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Matrices::Matrix)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Convert::Binary::C)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(DBD::Pg)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(PostScript::TextBlock)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Test::Exception)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Test::Warn)
> opt-perl-BioPerl-DB-1.006900-0.el6.noarch has missing requires of
> perl(DBD::Oracle)
> opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
> perl(Bio::Tools::Run::StandAloneBlastPlus::BlastMethods)
> opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
> perl(Bio::Tools::Run::WrapperBase::CommandExts)
> opt-perl-Cache-Cache-1.06-0.el6.noarch has missing requires of
> perl(IPC::ShareLite)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Handle)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Select)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlClient)
>>= ('0', '0.2000', None)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlServer)
>>= ('0', '0.2001', None)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Win32::ODBC)
> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk)
> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of
perl(Tk::Label)
> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Tree)
> opt-perl-Digest-Perl-MD5-1.8-0.el6.noarch has missing requires of
> /usr/bin/false
> opt-perl-HTTP-Cookies-6.01-0.el6.noarch has missing requires of perl(Win32)
> opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
> perl(Win32::Process)
> opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
> perl(Win32API::File)
> opt-perl-MLDBM-2.04-0.el6.noarch has missing requires of perl(FreezeThaw)
> opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
> perl(Moose::Conflicts)
> opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
> perl(Moose::Error::Util)
> opt-perl-Package-Stash-0.33-0.el6.noarch has missing requires of
> perl(Package::Stash::Conflicts)
> opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
> perl(MIME::Lite)
> opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
> perl(SOAP::Transport::TCP)
> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
> perl(Jcode)
> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
> perl(Spreadsheet::WriteExcel)
> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
> perl(Unicode::Map)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::DTDDecls)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::DocType)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::EncodingDetect)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::XMLDecl)
> opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base)
>> ('0', '0.47', None)
> opt-perl-YAML-0.84-0.el6.noarch has missing requires of
> perl(Test::Base::Filter)
> opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
> perl(Authen::NTLM)
> opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
> perl(HTTP::GHTTP)
>
>         [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.


-- 
Pascal Oettli
Project Scientist
JAMSTEC
Yokohama, Japan

Prof Brian Ripley

2013-Oct-25 06:29 UTC

head link

[R] 'yum install R' failing with tcl/tk issue

On 25/10/2013 02:33, Michael Stauffer wrote:> Hi,
>
> I'm trying to install R on CentOS 6.4.
This is not the right list.  But

- As the posting guide says, we only support current R here.  R 2.10.0 
is ancient, and other people seem to have found 3.0.1 RPMs for Centos 6.3.

- It seems your RPM is linked against Tcl/Tk 8.4, also ancient.  Tcl/Tk 
8.6 is current.

I suggest you install R 3.0.2 from the sources, in which case R-devel 
would be the right list.  For binary installations on CentOS, 
R-sig-Fedora is.
>
> Following some instructions online, I've done this:
>
> rpm -Uvh
>
http://download.fedoraproject.org/pub/epel/6/i386/epel-release-6-8.noarch.rpm
>
> yum install R
>
> But yum fails, with this (full output below):
>
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>             Requires: libtcl8.4.so()(64bit)
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>             Requires: libtk8.4.so()(64bit)
>
> I have tcl/tk 8.5 already installed. Does anyone have any suggestion?
> Thanks!
>
> Full output:
>
> [root at picsl-cluster ~]# yum install R
> Repository base is listed more than once in the configuration
> Rocks-6.1
>                            | 1.9 kB     00:00
> base
>                             | 3.7 kB     00:00
> Setting up Install Process
> Resolving Dependencies
> --> Running transaction check
> ---> Package R.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libRmath-devel = 2.10.0-2.el5 for package:
> R-2.10.0-2.el5.x86_64
> --> Processing Dependency: R-devel = 2.10.0-2.el5 for package:
> R-2.10.0-2.el5.x86_64
> --> Running transaction check
> ---> Package R-devel.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: R-core = 2.10.0-2.el5 for package:
> R-devel-2.10.0-2.el5.x86_64
> ---> Package libRmath-devel.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libRmath = 2.10.0-2.el5 for package:
> libRmath-devel-2.10.0-2.el5.x86_64
> --> Running transaction check
> ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libtk8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> --> Processing Dependency: libtcl8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> --> Processing Dependency: libgfortran.so.1()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> ---> Package libRmath.x86_64 0:2.10.0-2.el5 will be installed
> --> Running transaction check
> ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libtk8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> --> Processing Dependency: libtcl8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> ---> Package compat-libgfortran-41.x86_64 0:4.1.2-39.el6 will be
installed
> --> Finished Dependency Resolution
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>             Requires: libtcl8.4.so()(64bit)
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>             Requires: libtk8.4.so()(64bit)
>   You could try using --skip-broken to work around the problem
> ** Found 57 pre-existing rpmdb problem(s), 'yum check' output
follows:
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Client)
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Core)
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Delta)
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Ra)
> 1:guestfish-1.7.17-26.el6.x86_64 has missing requires of libguestfs =
('1',
> '1.7.17', '26.el6')
> opt-perl-AcePerl-1.92-0.el6.x86_64 has missing requires of
> perl(Ace::Browser::LocalSiteDefs)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Apache::DBI)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::ASN1::EntrezGene)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::Contact)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::DataSet)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::Platform)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::Sample)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Factory)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Forest::Tree)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::IO)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Matrices)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Matrices::Datum)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Matrices::Matrix)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Convert::Binary::C)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(DBD::Pg)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(PostScript::TextBlock)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Test::Exception)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Test::Warn)
> opt-perl-BioPerl-DB-1.006900-0.el6.noarch has missing requires of
> perl(DBD::Oracle)
> opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
> perl(Bio::Tools::Run::StandAloneBlastPlus::BlastMethods)
> opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
> perl(Bio::Tools::Run::WrapperBase::CommandExts)
> opt-perl-Cache-Cache-1.06-0.el6.noarch has missing requires of
> perl(IPC::ShareLite)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Handle)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Select)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlClient)
>> = ('0', '0.2000', None)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlServer)
>> = ('0', '0.2001', None)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Win32::ODBC)
> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk)
> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of
perl(Tk::Label)
> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Tree)
> opt-perl-Digest-Perl-MD5-1.8-0.el6.noarch has missing requires of
> /usr/bin/false
> opt-perl-HTTP-Cookies-6.01-0.el6.noarch has missing requires of perl(Win32)
> opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
> perl(Win32::Process)
> opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
> perl(Win32API::File)
> opt-perl-MLDBM-2.04-0.el6.noarch has missing requires of perl(FreezeThaw)
> opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
> perl(Moose::Conflicts)
> opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
> perl(Moose::Error::Util)
> opt-perl-Package-Stash-0.33-0.el6.noarch has missing requires of
> perl(Package::Stash::Conflicts)
> opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
> perl(MIME::Lite)
> opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
> perl(SOAP::Transport::TCP)
> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
> perl(Jcode)
> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
> perl(Spreadsheet::WriteExcel)
> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
> perl(Unicode::Map)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::DTDDecls)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::DocType)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::EncodingDetect)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::XMLDecl)
> opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base)
>> ('0', '0.47', None)
> opt-perl-YAML-0.84-0.el6.noarch has missing requires of
> perl(Test::Base::Filter)
> opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
> perl(Authen::NTLM)
> opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
> perl(HTTP::GHTTP)
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

Milan Bouchet-Valat

2013-Oct-25 09:33 UTC

head link

[R] 'yum install R' failing with tcl/tk issue

Le jeudi 24 octobre 2013 ? 21:33 -0400, Michael Stauffer a ?crit
:> Hi,
> 
> I'm trying to install R on CentOS 6.4.
> 
> Following some instructions online, I've done this:
> 
> rpm -Uvh
>
http://download.fedoraproject.org/pub/epel/6/i386/epel-release-6-8.noarch.rpm
> 
> yum install R
> 
> But yum fails, with this (full output below):
> 
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>            Requires: libtcl8.4.so()(64bit)
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>            Requires: libtk8.4.so()(64bit)
> 
> I have tcl/tk 8.5 already installed. Does anyone have any suggestion?
> Thanks!yum asks for tcl and tk 8.4, so if you have 8.5 it won't work.

You should have told us where you found those instructions. If these are
http://stackoverflow.com/questions/9468164/problems-installing-r-on-linux-centos-6-2
then please try what the poster did there.


Else, I've no idea whether it could work for your system, but the Tcl.Tk
8.4 RPM are available for Fedora 8 here:
ftp://ftp.pbone.net/mirror/archive.fedoraproject.org/fedora/linux/updates/8/x86_64.newkey/tcl-8.4.17-1.fc8.x86_64.rpm
ftp://ftp.pbone.net/mirror/archive.fedoraproject.org/fedora/linux/updates/8/x86_64.newkey/tk-8.4.17-2.fc8.x86_64.rpm



Regards
> Full output:
> 
> [root at picsl-cluster ~]# yum install R
> Repository base is listed more than once in the configuration
> Rocks-6.1
>                           | 1.9 kB     00:00
> base
>                            | 3.7 kB     00:00
> Setting up Install Process
> Resolving Dependencies
> --> Running transaction check
> ---> Package R.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libRmath-devel = 2.10.0-2.el5 for package:
> R-2.10.0-2.el5.x86_64
> --> Processing Dependency: R-devel = 2.10.0-2.el5 for package:
> R-2.10.0-2.el5.x86_64
> --> Running transaction check
> ---> Package R-devel.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: R-core = 2.10.0-2.el5 for package:
> R-devel-2.10.0-2.el5.x86_64
> ---> Package libRmath-devel.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libRmath = 2.10.0-2.el5 for package:
> libRmath-devel-2.10.0-2.el5.x86_64
> --> Running transaction check
> ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libtk8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> --> Processing Dependency: libtcl8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> --> Processing Dependency: libgfortran.so.1()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> ---> Package libRmath.x86_64 0:2.10.0-2.el5 will be installed
> --> Running transaction check
> ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
> --> Processing Dependency: libtk8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> --> Processing Dependency: libtcl8.4.so()(64bit) for package:
> R-core-2.10.0-2.el5.x86_64
> ---> Package compat-libgfortran-41.x86_64 0:4.1.2-39.el6 will be
installed
> --> Finished Dependency Resolution
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>            Requires: libtcl8.4.so()(64bit)
> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
>            Requires: libtk8.4.so()(64bit)
>  You could try using --skip-broken to work around the problem
> ** Found 57 pre-existing rpmdb problem(s), 'yum check' output
follows:
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Client)
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Core)
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Delta)
> foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Ra)
> 1:guestfish-1.7.17-26.el6.x86_64 has missing requires of libguestfs =
('1',
> '1.7.17', '26.el6')
> opt-perl-AcePerl-1.92-0.el6.x86_64 has missing requires of
> perl(Ace::Browser::LocalSiteDefs)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Apache::DBI)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::ASN1::EntrezGene)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::Contact)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::DataSet)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::Platform)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Expression::Sample)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Factory)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Forest::Tree)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::IO)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Matrices)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Matrices::Datum)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Bio::Phylo::Matrices::Matrix)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Convert::Binary::C)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(DBD::Pg)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(PostScript::TextBlock)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Test::Exception)
> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(Test::Warn)
> opt-perl-BioPerl-DB-1.006900-0.el6.noarch has missing requires of
> perl(DBD::Oracle)
> opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
> perl(Bio::Tools::Run::StandAloneBlastPlus::BlastMethods)
> opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
> perl(Bio::Tools::Run::WrapperBase::CommandExts)
> opt-perl-Cache-Cache-1.06-0.el6.noarch has missing requires of
> perl(IPC::ShareLite)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Handle)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Select)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlClient)
> >= ('0', '0.2000', None)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlServer)
> >= ('0', '0.2001', None)
> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Win32::ODBC)
> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk)
> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of
perl(Tk::Label)
> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Tree)
> opt-perl-Digest-Perl-MD5-1.8-0.el6.noarch has missing requires of
> /usr/bin/false
> opt-perl-HTTP-Cookies-6.01-0.el6.noarch has missing requires of perl(Win32)
> opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
> perl(Win32::Process)
> opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
> perl(Win32API::File)
> opt-perl-MLDBM-2.04-0.el6.noarch has missing requires of perl(FreezeThaw)
> opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
> perl(Moose::Conflicts)
> opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
> perl(Moose::Error::Util)
> opt-perl-Package-Stash-0.33-0.el6.noarch has missing requires of
> perl(Package::Stash::Conflicts)
> opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
> perl(MIME::Lite)
> opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
> perl(SOAP::Transport::TCP)
> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
> perl(Jcode)
> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
> perl(Spreadsheet::WriteExcel)
> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of
> perl(Unicode::Map)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::DTDDecls)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::DocType)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::EncodingDetect)
> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> perl(XML::SAX::PurePerl::XMLDecl)
> opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base)
>> ('0', '0.47', None)
> opt-perl-YAML-0.84-0.el6.noarch has missing requires of
> perl(Test::Base::Filter)
> opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
> perl(Authen::NTLM)
> opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
> perl(HTTP::GHTTP)
> 
> 	[[alternative HTML version deleted]]
> 
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

Michael Stauffer

2013-Oct-29 17:27 UTC

head link

[R] 'yum install R' failing with tcl/tk issue

Thanks everyone for the replies to my question. The issue turns out to be
that I'm on a Rocks cluster head node, and the Rocks distribution disables
alternate repos by defaut so it's using the Rocks-6.1 repo which has the
old R.

In the meantime I've built R 3.0.2 from source, which seems a better idea
anyway, as I'll need multiple versions of R installed over time.

-M


On Fri, Oct 25, 2013 at 7:43 AM, Marc Schwartz <marc_schwartz@me.com>
wrote:
>
> On Oct 25, 2013, at 1:29 AM, Prof Brian Ripley
<ripley@stats.ox.ac.uk>
> wrote:
>
> > On 25/10/2013 02:33, Michael Stauffer wrote:
> >> Hi,
> >>
> >> I'm trying to install R on CentOS 6.4.
> >
> > This is not the right list.  But
> >
> > - As the posting guide says, we only support current R here.  R 2.10.0
> is ancient, and other people seem to have found 3.0.1 RPMs for Centos 6.3.
> >
> > - It seems your RPM is linked against Tcl/Tk 8.4, also ancient. 
Tcl/Tk
> 8.6 is current.
> >
> > I suggest you install R 3.0.2 from the sources, in which case R-devel
> would be the right list.  For binary installations on CentOS, R-sig-Fedora
> is.
> >
>
> There are several inconsistencies in the output, as 3.0.1 is available as
> an RPM from the EPEL repos:
>
>   http://dl.fedoraproject.org/pub/epel/6/x86_64/repoview/R.html
>
> In addition, the output below shows that the R rpm being installed is from
> 'el5', rather than 'el6'. If this was CentOS 5, rather than
6, R 2.15.2 is
> available:
>
>   http://dl.fedoraproject.org/pub/epel/5/x86_64/repoview/R.html
>
> Something seems to be amiss with the configuration not getting the right
> yum repo paths.
>
> A Google search came up with this link:
>
>   http://lancegatlin.org/tech/centos-6-clear-the-yum-cache
>
> which might be helpful, as it suggests a similar issue of yum picking up
> incorrect versions. You may need to reinstall the EPEL repo RPM after these
> steps.
>
> Regards,
>
> Marc Schwartz
>
>
> >>
> >> Following some instructions online, I've done this:
> >>
> >> rpm -Uvh
> >>
>
http://download.fedoraproject.org/pub/epel/6/i386/epel-release-6-8.noarch.rpm
> >>
> >> yum install R
> >>
> >> But yum fails, with this (full output below):
> >>
> >> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
> >>            Requires: libtcl8.4.so()(64bit)
> >> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
> >>            Requires: libtk8.4.so()(64bit)
> >>
> >> I have tcl/tk 8.5 already installed. Does anyone have any
suggestion?
> >> Thanks!
> >>
> >> Full output:
> >>
> >> [root@picsl-cluster ~]# yum install R
> >> Repository base is listed more than once in the configuration
> >> Rocks-6.1
> >>                           | 1.9 kB     00:00
> >> base
> >>                            | 3.7 kB     00:00
> >> Setting up Install Process
> >> Resolving Dependencies
> >> --> Running transaction check
> >> ---> Package R.x86_64 0:2.10.0-2.el5 will be installed
> >> --> Processing Dependency: libRmath-devel = 2.10.0-2.el5 for
package:
> >> R-2.10.0-2.el5.x86_64
> >> --> Processing Dependency: R-devel = 2.10.0-2.el5 for package:
> >> R-2.10.0-2.el5.x86_64
> >> --> Running transaction check
> >> ---> Package R-devel.x86_64 0:2.10.0-2.el5 will be installed
> >> --> Processing Dependency: R-core = 2.10.0-2.el5 for package:
> >> R-devel-2.10.0-2.el5.x86_64
> >> ---> Package libRmath-devel.x86_64 0:2.10.0-2.el5 will be
installed
> >> --> Processing Dependency: libRmath = 2.10.0-2.el5 for package:
> >> libRmath-devel-2.10.0-2.el5.x86_64
> >> --> Running transaction check
> >> ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
> >> --> Processing Dependency: libtk8.4.so()(64bit) for package:
> >> R-core-2.10.0-2.el5.x86_64
> >> --> Processing Dependency: libtcl8.4.so()(64bit) for package:
> >> R-core-2.10.0-2.el5.x86_64
> >> --> Processing Dependency: libgfortran.so.1()(64bit) for
package:
> >> R-core-2.10.0-2.el5.x86_64
> >> ---> Package libRmath.x86_64 0:2.10.0-2.el5 will be installed
> >> --> Running transaction check
> >> ---> Package R-core.x86_64 0:2.10.0-2.el5 will be installed
> >> --> Processing Dependency: libtk8.4.so()(64bit) for package:
> >> R-core-2.10.0-2.el5.x86_64
> >> --> Processing Dependency: libtcl8.4.so()(64bit) for package:
> >> R-core-2.10.0-2.el5.x86_64
> >> ---> Package compat-libgfortran-41.x86_64 0:4.1.2-39.el6 will
be
> installed
> >> --> Finished Dependency Resolution
> >> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
> >>            Requires: libtcl8.4.so()(64bit)
> >> Error: Package: R-core-2.10.0-2.el5.x86_64 (Rocks-6.1)
> >>            Requires: libtk8.4.so()(64bit)
> >>  You could try using --skip-broken to work around the problem
> >> ** Found 57 pre-existing rpmdb problem(s), 'yum check'
output follows:
> >> foundation-git-1.7.11.4-0.x86_64 has missing requires of
> perl(SVN::Client)
> >> foundation-git-1.7.11.4-0.x86_64 has missing requires of
perl(SVN::Core)
> >> foundation-git-1.7.11.4-0.x86_64 has missing requires of
> perl(SVN::Delta)
> >> foundation-git-1.7.11.4-0.x86_64 has missing requires of
perl(SVN::Ra)
> >> 1:guestfish-1.7.17-26.el6.x86_64 has missing requires of
libguestfs > ('1',
> >> '1.7.17', '26.el6')
> >> opt-perl-AcePerl-1.92-0.el6.x86_64 has missing requires of
> >> perl(Ace::Browser::LocalSiteDefs)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Apache::DBI)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::ASN1::EntrezGene)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::Expression::Contact)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::Expression::DataSet)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::Expression::Platform)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::Expression::Sample)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::Phylo::Factory)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::Phylo::Forest::Tree)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::Phylo::IO)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::Phylo::Matrices)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::Phylo::Matrices::Datum)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Bio::Phylo::Matrices::Matrix)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Convert::Binary::C)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> perl(DBD::Pg)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(PostScript::TextBlock)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Test::Exception)
> >> opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of
> >> perl(Test::Warn)
> >> opt-perl-BioPerl-DB-1.006900-0.el6.noarch has missing requires of
> >> perl(DBD::Oracle)
> >> opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
> >> perl(Bio::Tools::Run::StandAloneBlastPlus::BlastMethods)
> >> opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of
> >> perl(Bio::Tools::Run::WrapperBase::CommandExts)
> >> opt-perl-Cache-Cache-1.06-0.el6.noarch has missing requires of
> >> perl(IPC::ShareLite)
> >> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro)
> >> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of
> perl(Coro::Handle)
> >> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of
> perl(Coro::Select)
> >> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of
> perl(RPC::PlClient)
> >>> = ('0', '0.2000', None)
> >> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of
> perl(RPC::PlServer)
> >>> = ('0', '0.2001', None)
> >> opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of
> perl(Win32::ODBC)
> >> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of
perl(Tk)
> >> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of
> perl(Tk::Label)
> >> opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of
> perl(Tk::Tree)
> >> opt-perl-Digest-Perl-MD5-1.8-0.el6.noarch has missing requires of
> >> /usr/bin/false
> >> opt-perl-HTTP-Cookies-6.01-0.el6.noarch has missing requires of
> perl(Win32)
> >> opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
> >> perl(Win32::Process)
> >> opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of
> >> perl(Win32API::File)
> >> opt-perl-MLDBM-2.04-0.el6.noarch has missing requires of
> perl(FreezeThaw)
> >> opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
> >> perl(Moose::Conflicts)
> >> opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of
> >> perl(Moose::Error::Util)
> >> opt-perl-Package-Stash-0.33-0.el6.noarch has missing requires of
> >> perl(Package::Stash::Conflicts)
> >> opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
> >> perl(MIME::Lite)
> >> opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of
> >> perl(SOAP::Transport::TCP)
> >> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing
requires
> of
> >> perl(Jcode)
> >> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing
requires
> of
> >> perl(Spreadsheet::WriteExcel)
> >> opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing
requires
> of
> >> perl(Unicode::Map)
> >> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> >> perl(XML::SAX::PurePerl::DTDDecls)
> >> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> >> perl(XML::SAX::PurePerl::DocType)
> >> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> >> perl(XML::SAX::PurePerl::EncodingDetect)
> >> opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of
> >> perl(XML::SAX::PurePerl::XMLDecl)
> >> opt-perl-YAML-0.84-0.el6.noarch has missing requires of
> perl(Test::Base) >> >> ('0', '0.47', None)
> >> opt-perl-YAML-0.84-0.el6.noarch has missing requires of
> >> perl(Test::Base::Filter)
> >> opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
> >> perl(Authen::NTLM)
> >> opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of
> >> perl(HTTP::GHTTP)
>
>
	[[alternative HTML version deleted]]

R help - Oct 2013 - 'yum install R' failing with tcl/tk issue

[R] 'yum install R' failing with tcl/tk issue

[R] 'yum install R' failing with tcl/tk issue

[R] 'yum install R' failing with tcl/tk issue

[R] 'yum install R' failing with tcl/tk issue

[R] 'yum install R' failing with tcl/tk issue