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Cleber N.Borges

2013-Oct-05 00:03 UTC

[R] trying to compile R in win 7 (with Rtools)

hello all,
I am trying to compile the R in Win7
and compiles one small part

but the script don't move from the 'base' directory to
'stats'

I installed the Rtools likee administrator
and call the terminal (MS-DOS) like administrator too.

if somebody can tell me any tips, I thank in advanced
cleber
#############################################


File LOG

http://klebyn.ploud.com/arquivo_log/log


C:\Rsrc>
C:\Rsrc>
C:\Rsrc>tar -xf R-3.0.2.tar.gz

C:\Rsrc>where basename cat cmp comm cp cut date diff du echo expr gzip 
ls makeinfo
C:\Rtools\bin\basename.exe
C:\Rtools\bin\cat.exe
C:\Rtools\bin\cmp.exe
C:\Rtools\bin\comm.exe
C:\Rtools\bin\cp.exe
C:\Rtools\bin\cut.exe
C:\Rtools\bin\date.exe
C:\Rtools\bin\diff.exe
C:\Rtools\bin\du.exe
C:\Rtools\bin\echo.exe
C:\Rtools\bin\expr.exe
C:\Rtools\bin\gzip.exe
C:\Rtools\bin\ls.exe
C:\Rtools\bin\makeinfo.exe
C:\Program Files (x86)\MiKTeX 2.9\miktex\bin\makeinfo.exe

C:\Rsrc>where mkdir mv rm rsync sed sort texindex touch uniq
C:\Rtools\bin\mkdir.exe
C:\Rtools\bin\mv.exe
C:\Rtools\bin\rm.exe
C:\Rtools\bin\rsync.exe
C:\Rtools\bin\sed.exe
C:\Rtools\bin\sort.exe
C:\Windows\System32\sort.exe
C:\Rtools\bin\texindex.exe
C:\Program Files (x86)\MiKTeX 2.9\miktex\bin\texindex.exe
C:\Rtools\bin\touch.exe
C:\Rtools\bin\uniq.exe

C:\Rsrc>sort --version
sort (GNU coreutils) 8.15
Packaged by Cygwin (8.15-1)
Copyright (C) 2012 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later 
<http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

Written by Mike Haertel and Paul Eggert.

C:\Rsrc>cd R-3.0.2\src\gnuwin32
C:\Rsrc\R-3.0.2\src\gnuwin32>make all recommended > compilaR.log
#########################################################################
#########################################################################

http://klebyn.ploud.com/arquivo_log/log

#########################################################################
#########################################################################

connections.c: In function 'do_readbin':
connections.c:3759:8: warning: dereferencing type-punned pointer will 
break strict-aliasing rules [-Wstrict-aliasing]
connections.c:3761:8: warning: dereferencing type-punned pointer will 
break strict-aliasing rules [-Wstrict-aliasing]
connections.c:3769:4: warning: dereferencing type-punned pointer will 
break strict-aliasing rules [-Wstrict-aliasing]
connections.c:3784:4: warning: dereferencing type-punned pointer will 
break strict-aliasing rules [-Wstrict-aliasing]
connections.c:3788:4: warning: dereferencing type-punned pointer will 
break strict-aliasing rules [-Wstrict-aliasing]
pcre_exec.c: In function 'pcre_exec':
pcre_exec.c:7190:20: warning: 'match_partial' may be used uninitialized 
in this function [-Wuninitialized]
localtime.c: In function 'timesub.isra.2':
localtime.c:1407:5: warning: assuming signed overflow does not occur 
when assuming that (X + c) < X is always false [-Wstrict-overflow]
localtime.c:1411:8: warning: assuming signed overflow does not occur 
when assuming that (X - c) > X is always false [-Wstrict-overflow]
localtime.c: In function 'time2sub.constprop.10':
localtime.c:1566:8: warning: assuming signed overflow does not occur 
when assuming that (X + c) < X is always false [-Wstrict-overflow]
localtime.c:1581:5: warning: assuming signed overflow does not occur 
when assuming that (X + c) < X is always false [-Wstrict-overflow]
localtime.c:1593:9: warning: assuming signed overflow does not occur 
when assuming that (X + c) < X is always false [-Wstrict-overflow]
localtime.c:1599:8: warning: assuming signed overflow does not occur 
when assuming that (X - c) > X is always false [-Wstrict-overflow]
localtime.c:1619:5: warning: assuming signed overflow does not occur 
when assuming that (X - c) > X is always false [-Wstrict-overflow]
cannot create /tmp/R4428: directory nonexistent
mv: cannot stat `/tmp/R4428': No such file or directory
make[3]: *** [mkR1] Error 1
make[2]: *** [all] Error 2
make[1]: *** [R] Error 1
make: *** [all] Error 2

C:\Rsrc\R-3.0.2\src\gnuwin32>

Tambellini William

2013-Oct-05 00:58 UTC

head link

[R] trying to compile R in win 7 (with Rtools)

Hi Cleber
  It cant find /tmp which does not exist on standard win32 mount system.
  Are you sure you dont have to call the "make all..." from the cygwin
bash ("cygwin terminal") and not the "msdos" pseudo terminal
?
W.


Le 04/10/2013 17:03, Cleber N.Borges a ?crit :> hello all,
> I am trying to compile the R in Win7
> and compiles one small part
>
> but the script don't move from the 'base' directory to
'stats'
>
> I installed the Rtools likee administrator
> and call the terminal (MS-DOS) like administrator too.
>
> if somebody can tell me any tips, I thank in advanced
> cleber
> #############################################
>
>
> File LOG
>
> http://klebyn.ploud.com/arquivo_log/log
>
>
> C:\Rsrc>
> C:\Rsrc>
> C:\Rsrc>tar -xf R-3.0.2.tar.gz
>
> C:\Rsrc>where basename cat cmp comm cp cut date diff du echo expr gzip 
> ls makeinfo
> C:\Rtools\bin\basename.exe
> C:\Rtools\bin\cat.exe
> C:\Rtools\bin\cmp.exe
> C:\Rtools\bin\comm.exe
> C:\Rtools\bin\cp.exe
> C:\Rtools\bin\cut.exe
> C:\Rtools\bin\date.exe
> C:\Rtools\bin\diff.exe
> C:\Rtools\bin\du.exe
> C:\Rtools\bin\echo.exe
> C:\Rtools\bin\expr.exe
> C:\Rtools\bin\gzip.exe
> C:\Rtools\bin\ls.exe
> C:\Rtools\bin\makeinfo.exe
> C:\Program Files (x86)\MiKTeX 2.9\miktex\bin\makeinfo.exe
>
> C:\Rsrc>where mkdir mv rm rsync sed sort texindex touch uniq
> C:\Rtools\bin\mkdir.exe
> C:\Rtools\bin\mv.exe
> C:\Rtools\bin\rm.exe
> C:\Rtools\bin\rsync.exe
> C:\Rtools\bin\sed.exe
> C:\Rtools\bin\sort.exe
> C:\Windows\System32\sort.exe
> C:\Rtools\bin\texindex.exe
> C:\Program Files (x86)\MiKTeX 2.9\miktex\bin\texindex.exe
> C:\Rtools\bin\touch.exe
> C:\Rtools\bin\uniq.exe
>
> C:\Rsrc>sort --version
> sort (GNU coreutils) 8.15
> Packaged by Cygwin (8.15-1)
> Copyright (C) 2012 Free Software Foundation, Inc.
> License GPLv3+: GNU GPL version 3 or later 
> <http://gnu.org/licenses/gpl.html>.
> This is free software: you are free to change and redistribute it.
> There is NO WARRANTY, to the extent permitted by law.
>
> Written by Mike Haertel and Paul Eggert.
>
> C:\Rsrc>cd R-3.0.2\src\gnuwin32
> C:\Rsrc\R-3.0.2\src\gnuwin32>make all recommended > compilaR.log
> #########################################################################
> #########################################################################
>
> http://klebyn.ploud.com/arquivo_log/log
>
> #########################################################################
> #########################################################################
>
> connections.c: In function 'do_readbin':
> connections.c:3759:8: warning: dereferencing type-punned pointer will 
> break strict-aliasing rules [-Wstrict-aliasing]
> connections.c:3761:8: warning: dereferencing type-punned pointer will 
> break strict-aliasing rules [-Wstrict-aliasing]
> connections.c:3769:4: warning: dereferencing type-punned pointer will 
> break strict-aliasing rules [-Wstrict-aliasing]
> connections.c:3784:4: warning: dereferencing type-punned pointer will 
> break strict-aliasing rules [-Wstrict-aliasing]
> connections.c:3788:4: warning: dereferencing type-punned pointer will 
> break strict-aliasing rules [-Wstrict-aliasing]
> pcre_exec.c: In function 'pcre_exec':
> pcre_exec.c:7190:20: warning: 'match_partial' may be used 
> uninitialized in this function [-Wuninitialized]
> localtime.c: In function 'timesub.isra.2':
> localtime.c:1407:5: warning: assuming signed overflow does not occur 
> when assuming that (X + c) < X is always false [-Wstrict-overflow]
> localtime.c:1411:8: warning: assuming signed overflow does not occur 
> when assuming that (X - c) > X is always false [-Wstrict-overflow]
> localtime.c: In function 'time2sub.constprop.10':
> localtime.c:1566:8: warning: assuming signed overflow does not occur 
> when assuming that (X + c) < X is always false [-Wstrict-overflow]
> localtime.c:1581:5: warning: assuming signed overflow does not occur 
> when assuming that (X + c) < X is always false [-Wstrict-overflow]
> localtime.c:1593:9: warning: assuming signed overflow does not occur 
> when assuming that (X + c) < X is always false [-Wstrict-overflow]
> localtime.c:1599:8: warning: assuming signed overflow does not occur 
> when assuming that (X - c) > X is always false [-Wstrict-overflow]
> localtime.c:1619:5: warning: assuming signed overflow does not occur 
> when assuming that (X - c) > X is always false [-Wstrict-overflow]
> cannot create /tmp/R4428: directory nonexistent
> mv: cannot stat `/tmp/R4428': No such file or directory
> make[3]: *** [mkR1] Error 1
> make[2]: *** [all] Error 2
> make[1]: *** [R] Error 1
> make: *** [all] Error 2
>
> C:\Rsrc\R-3.0.2\src\gnuwin32>
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide 
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

Joshua Wiley

2013-Oct-05 01:02 UTC

head link

[R] trying to compile R in win 7 (with Rtools)

Hi Cleber,

You need to set TMPDIR to a valid directory, the default /tmp/ does not
work on Windows.
>From the cmd shell:
set TMPDIR=C:/TMP

for example

and then run make all recommended

Cheers,

Josh


On Fri, Oct 4, 2013 at 5:03 PM, Cleber N.Borges <klebyn@yahoo.com.br>
wrote:
> hello all,
> I am trying to compile the R in Win7
> and compiles one small part
>
> but the script don't move from the 'base' directory to
'stats'
>
> I installed the Rtools likee administrator
> and call the terminal (MS-DOS) like administrator too.
>
> if somebody can tell me any tips, I thank in advanced
> cleber
> ##############################**###############
>
>
> File LOG
>
>
http://klebyn.ploud.com/**arquivo_log/log<http://klebyn.ploud.com/arquivo_log/log>
>
>
> C:\Rsrc>
> C:\Rsrc>
> C:\Rsrc>tar -xf R-3.0.2.tar.gz
>
> C:\Rsrc>where basename cat cmp comm cp cut date diff du echo expr gzip
ls
> makeinfo
> C:\Rtools\bin\basename.exe
> C:\Rtools\bin\cat.exe
> C:\Rtools\bin\cmp.exe
> C:\Rtools\bin\comm.exe
> C:\Rtools\bin\cp.exe
> C:\Rtools\bin\cut.exe
> C:\Rtools\bin\date.exe
> C:\Rtools\bin\diff.exe
> C:\Rtools\bin\du.exe
> C:\Rtools\bin\echo.exe
> C:\Rtools\bin\expr.exe
> C:\Rtools\bin\gzip.exe
> C:\Rtools\bin\ls.exe
> C:\Rtools\bin\makeinfo.exe
> C:\Program Files (x86)\MiKTeX 2.9\miktex\bin\makeinfo.exe
>
> C:\Rsrc>where mkdir mv rm rsync sed sort texindex touch uniq
> C:\Rtools\bin\mkdir.exe
> C:\Rtools\bin\mv.exe
> C:\Rtools\bin\rm.exe
> C:\Rtools\bin\rsync.exe
> C:\Rtools\bin\sed.exe
> C:\Rtools\bin\sort.exe
> C:\Windows\System32\sort.exe
> C:\Rtools\bin\texindex.exe
> C:\Program Files (x86)\MiKTeX 2.9\miktex\bin\texindex.exe
> C:\Rtools\bin\touch.exe
> C:\Rtools\bin\uniq.exe
>
> C:\Rsrc>sort --version
> sort (GNU coreutils) 8.15
> Packaged by Cygwin (8.15-1)
> Copyright (C) 2012 Free Software Foundation, Inc.
> License GPLv3+: GNU GPL version 3 or later
<http://gnu.org/licenses/gpl.**
> html <http://gnu.org/licenses/gpl.html>>.
> This is free software: you are free to change and redistribute it.
> There is NO WARRANTY, to the extent permitted by law.
>
> Written by Mike Haertel and Paul Eggert.
>
> C:\Rsrc>cd R-3.0.2\src\gnuwin32
> C:\Rsrc\R-3.0.2\src\gnuwin32>**make all recommended > compilaR.log
> ##############################**##############################**
> #############
> ##############################**##############################**
> #############
>
>
http://klebyn.ploud.com/**arquivo_log/log<http://klebyn.ploud.com/arquivo_log/log>
>
> ##############################**##############################**
> #############
> ##############################**##############################**
> #############
>
> connections.c: In function 'do_readbin':
> connections.c:3759:8: warning: dereferencing type-punned pointer will
> break strict-aliasing rules [-Wstrict-aliasing]
> connections.c:3761:8: warning: dereferencing type-punned pointer will
> break strict-aliasing rules [-Wstrict-aliasing]
> connections.c:3769:4: warning: dereferencing type-punned pointer will
> break strict-aliasing rules [-Wstrict-aliasing]
> connections.c:3784:4: warning: dereferencing type-punned pointer will
> break strict-aliasing rules [-Wstrict-aliasing]
> connections.c:3788:4: warning: dereferencing type-punned pointer will
> break strict-aliasing rules [-Wstrict-aliasing]
> pcre_exec.c: In function 'pcre_exec':
> pcre_exec.c:7190:20: warning: 'match_partial' may be used
uninitialized in
> this function [-Wuninitialized]
> localtime.c: In function 'timesub.isra.2':
> localtime.c:1407:5: warning: assuming signed overflow does not occur when
> assuming that (X + c) < X is always false [-Wstrict-overflow]
> localtime.c:1411:8: warning: assuming signed overflow does not occur when
> assuming that (X - c) > X is always false [-Wstrict-overflow]
> localtime.c: In function 'time2sub.constprop.10':
> localtime.c:1566:8: warning: assuming signed overflow does not occur when
> assuming that (X + c) < X is always false [-Wstrict-overflow]
> localtime.c:1581:5: warning: assuming signed overflow does not occur when
> assuming that (X + c) < X is always false [-Wstrict-overflow]
> localtime.c:1593:9: warning: assuming signed overflow does not occur when
> assuming that (X + c) < X is always false [-Wstrict-overflow]
> localtime.c:1599:8: warning: assuming signed overflow does not occur when
> assuming that (X - c) > X is always false [-Wstrict-overflow]
> localtime.c:1619:5: warning: assuming signed overflow does not occur when
> assuming that (X - c) > X is always false [-Wstrict-overflow]
> cannot create /tmp/R4428: directory nonexistent
> mv: cannot stat `/tmp/R4428': No such file or directory
> make[3]: *** [mkR1] Error 1
> make[2]: *** [all] Error 2
> make[1]: *** [R] Error 1
> make: *** [all] Error 2
>
> C:\Rsrc\R-3.0.2\src\gnuwin32>
>
> ______________________________**________________
> R-help@r-project.org mailing list
>
https://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help>
> PLEASE do read the posting guide http://www.R-project.org/**
> posting-guide.html <http://www.R-project.org/posting-guide.html>
> and provide commented, minimal, self-contained, reproducible code.
>


-- 
Joshua Wiley
Ph.D. Student, Health Psychology
University of California, Los Angeles
http://joshuawiley.com/
Senior Analyst - Elkhart Group Ltd.
http://elkhartgroup.com

	[[alternative HTML version deleted]]

Cleber N.Borges

2013-Oct-05 01:30 UTC

head link

[R] trying to compile R in win 7 (with Rtools)

thanks.

I am logged in the MS-DOS.

I thought that cygwin is not necessary...
in cygwin terminal, when I type: "where sh"

CLEBER at pinkfloyd /cygdrive/c
$ where sh
C:\cygwin\bin\sh.exe
C:\Rtools\bin\sh.exe

so, I have two version of "sh"
and the cygwin will be priority...

I will make more test and to consider your sugestion of cygwin...

thanks

cleber



Em 04/10/2013 21:58, Tambellini William escreveu:> Hi Cleber
>  It cant find /tmp which does not exist on standard win32 mount system.
>  Are you sure you dont have to call the "make all..." from the
cygwin
> bash ("cygwin terminal") and not the "msdos" pseudo
terminal ?
> W.
>

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