sagarnikam123
2012-Oct-13 03:07 UTC
[R] RS-MySQL.h:32:19: fatal error: mysql.h: No such file or directory
i m installing RMySQL under windows -7 64bit, i have wamp server(which has mysql5.5.16) i have given MYSQL_HOME path in environment variable as MYSQL_HOME=C:\wamp\bin\mysql\mysql5.5.16\bin , & also create Renviron.site file in C:\Program Files\R\R-2.15.0\etc giving MYSQL_HOME=C:/wamp/bin/mysql/mysql5.5.16/bin as path i install c connector "MySQL Connector C 6.0.2" version also, which has mysql.h file Question:- In which folder should I include mysql.h file ? i dont know how to put mysql.h in RMySQL_0.9-3.tar.gz f, if yes how can i do it ?> install.packages("RMySQL",type="source")Installing package(s) into ?C:/Users/trendwise/Documents/R/win-library/2.15? (as ?lib? is unspecified) trying URL 'http://ftp.iitm.ac.in/cran/src/contrib/RMySQL_0.9-3.tar.gz' Content type 'application/x-gzip' length 165363 bytes (161 Kb) opened URL downloaded 161 Kb * installing *source* package 'RMySQL' ... ** package 'RMySQL' successfully unpacked and MD5 sums checked checking for $MYSQL_HOME... C:\wamp\bin\mysql\mysql5.5.16\bin cygwin warning: MS-DOS style path detected: C:\wamp\bin\mysql\mysql5.5.16\bin Preferred POSIX equivalent is: /cygdrive/c/wamp/bin/mysql/mysql5.5.16/bin CYGWIN environment variable option "nodosfilewarning" turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames ** libs Warning: this package has a non-empty 'configure.win' file, so building only the main architecture cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-215~1.0/etc/x64/Makeconf Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-215~1.0/etc/x64/Makeconf CYGWIN environment variable option "nodosfilewarning" turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames gcc -m64 -I"C:/PROGRA~1/R/R-215~1.0/include" -DNDEBUG -I"C:\wamp\bin\mysql\mysql5.5.16\bin"/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c RS-DBI.c -o RS-DBI.o RS-DBI.c: In function 'RS_na_set': RS-DBI.c:1219:11: warning: variable 'c' set but not used [-Wunused-but-set-variable] gcc -m64 -I"C:/PROGRA~1/R/R-215~1.0/include" -DNDEBUG -I"C:\wamp\bin\mysql\mysql5.5.16\bin"/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c RS-MySQL.c -o RS-MySQL.o In file included from RS-MySQL.c:22:0: RS-MySQL.h:32:19: fatal error: mysql.h: No such file or directory compilation terminated. make: *** [RS-MySQL.o] Error 1 ERROR: compilation failed for package 'RMySQL' * removing 'C:/Users/trendwise/Documents/R/win-library/2.15/RMySQL' * restoring previous 'C:/Users/trendwise/Documents/R/win-library/2.15/RMySQL' Warning in install.packages : running command 'C:/PROGRA~1/R/R-215~1.0/bin/x64/R CMD INSTALL -l "C:/Users/trendwise/Documents/R/win-library/2.15" C:\Users\TRENDW~1\AppData\Local\Temp\RtmpshWgve/downloaded_packages/RMySQL_0.9-3.tar.gz' had status 1 Warning in install.packages : installation of package ?RMySQL? had non-zero exit status ----- Sagar Nikam B.Pharm, M.Sc(Bioinformatics) Software Engineer (Data Research Analyst ) Trendwise Analytics,Bangalore India -- View this message in context: http://r.789695.n4.nabble.com/RS-MySQL-h-32-19-fatal-error-mysql-h-No-such-file-or-directory-tp4646060.html Sent from the R help mailing list archive at Nabble.com.