Duncan
Brilliant. This solved the problem. Library (rgl) is now
accessiible, and the plot3d function works fine in X11 (which I think
is how it worked before anyway). Whatever I may be missing, I don't
think I'll notice.
Best,
Mark
On Apr 13, 2012, at 11:08 AM, Duncan Murdoch wrote:
> On 13/04/2012 11:44 AM, Duncan Murdoch wrote:
>> There were no changes to that code (the OSXGUIFactory) between
>> 0.92.861
>> and 0.92.879, so I'd have to assume it's a difference between
the
>> systems used to build it. All I can suggest is that you go back to
>> the
>> older one if you can't do a build yourself.
>
> I've had some discussions offline with another user who had this
> problem. For him, the workaround was to delete the aglrgl.so
> library (full path given in the error message). This will cause rgl
> to fall back to using X11 for graphics. It doesn't look as nice as
> the native window, but as long as you have X11 working, it should
> work.
>
> Duncan Murdoch
>
>> Duncan Murdoch
>>
>> On 12/04/2012 5:27 PM, Grimes Mark wrote:
>> > Dear All
>> >
>> > I am unhappy to report that rgl_0.92.879 gives the following
>> error:
>> > Error : .onLoad failed in loadNamespace() for 'rgl',
details:
>> > call: dyn.load(file, DLLpath = DLLpath, ...)
>> > error: unable to load shared object
>> >
'/Library/Frameworks/R.framework/Versions/2.15/Resources/library/
>> rgl/libs/x86_64/aglrgl.so':
>> >
>> > dlopen(/Library/Frameworks/R.framework/Versions/2.15/Resources/
>> library/rgl/libs/x86_64/aglrgl.so,
>> > 6): Symbol not found: __ZN3gui13OSXGUIFactory12hasEventLoopEv
>> > Referenced from:
>> > /Library/Frameworks/R.framework/Versions/2.15/Resources/library/
>> rgl/libs/x86_64/aglrgl.so
>> > Expected in: dynamic lookup
>> >
>> > Error: package/namespace load failed for ?rgl?
>> > >sessionInfo()
>> > R version 2.15.0 (2012-03-30)
>> > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>> >
>> > locale:
>> > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>> >
>> > attached base packages:
>> > [1] splines stats graphics grDevices utils datasets
>> > methods base
>> >
>> > other attached packages:
>> > [1] RUnit_0.4.26 bio3d_1.1-3 RCytoscape_1.6.2
>> > XMLRPC_0.2-4 graph_1.34.0 org.Hs.eg.db_2.7.1
>> > RSQLite_0.11.1 DBI_0.2-5 AnnotationDbi_1.18.0
>> > [10] Biobase_2.16.0 BiocGenerics_0.2.0 adegenet_1.3-4
>> > ade4_1.4-17 MASS_7.3-17 cluster_1.14.2
>> > Hmisc_3.9-3 survival_2.36-12 plyr_1.7.1
>> >
>> > loaded via a namespace (and not attached):
>> > [1] grid_2.15.0 IRanges_1.14.2 lattice_0.20-6 RCurl_1.91-1
>> > stats4_2.15.0 tools_2.15.0 XML_3.9-4
>> > >
>> > I don't understand how this happens or how to fix it.
Doesn't
>> matter
>> > if I use CRAN or R CMD INSTALL from terminal. Terminal gave me
no
>> > errors when I installed in this way:
>> > ~? R CMD INSTALL /Users/Mark/R_/Packages/rgl_0.92.879.tar
>> > * installing to library
>> > ?/Library/Frameworks/R.framework/Versions/2.15/Resources/library?
>> > * installing *binary* package ?rgl? ...
>> >
>> > * DONE (rgl)
>> > ~ ?
>> > Mark
>> >
>> > On Apr 5, 2012, at 5:06 PM, Grimes Mark wrote:
>> >
>> >> Dear David, Duncan, and Jochen, and everyone
>> >>
>> >> I am happy to report that with R version 2.15.0,
rgl_0.92.861
>> now
>> >> loads properly. To whoever fixed this, thank you!
>> >>
>> >> Mark
>> >>
>> >>
>> >>> Below some more observations that might help you locate
the
>> problem.
>> >>>
>> >>> Also sorry for ignoring the posting rules in my last
post. I was
>> >>> still on 2.14.1, and installing from source from the GUI
>> version of
>> >>> R64. Installing from source from R64 GUI still works
after the
>> >>> upgrade to R 2.14.2, .
>> >>>
>> >>> The 32 bit versions of R don't work for me anymore,
probably
>> because
>> >>> I have only installed the 64 bit versions of some
libraries
>> under
>> >>> Lion. I have never noticed before, since after the
problem
>> discussed
>> >>> in this thread
>> >>>
https://stat.ethz.ch/pipermail/r-sig-mac/2010-July/007609.html I
>> >>> have been using R64 exclusively.
>> >>>
>> >>> Also note that installing from the command line
(Terminal)
>> version
>> >>> of either R32 or R64 gives the error
>> >>>
>> >>>> checking for glEnd in -lGL... no
>> >>>> configure: error: missing required library GL
>> >>>
>> >>> Presumably, something is wrong with my bash environment
and the
>> >>> configure script is picking up the wrong gl libraries.
>> >>> Installing from source does work after downloading and
>> unzipping the
>> >>> rgl tarball with
>> >>>
>> >>> ./configure --with-gl-libs=/usr/X11/lib
>> >>> --with-gl-includes=/usr/X11/include
>> >>>
>> >>>
>> >>> Jochen
>> >>>
>> >>> On Mar 28, 2012, at 10:15 AM, Duncan Murdoch wrote:
>> >>>
>> >>>> On 12-03-27 6:31 PM, Grimes Mark wrote:
>> >>>>> Dear People
>> >>>>>
>> >>>>> I can't figure out how to fix this problem:
rgl won't run
>> under R
>> >>>>> 2.14.2 (it was working for me before under
2.14.0). The
>> error message
>> >>>>> is:
>> >>>>
>> >>>> rgl is currently changing fairly rapidly. I'd
suggest trying
>> to
>> >>>> install again (the current version, as of yesterday,
is
>> 0.92.861).
>> >>>> If that's not enough, I'd install a binary
build (which may
>> be a
>> >>>> little old, but at least it built successfully...).
>> >>>>
>> >>>> Duncan Murdoch
>> >>>
>> >>> Thanks for your continued efforts Duncan. I had tried
>> compiling that
>> >>> version from source and gotten an error but when I
attempted to
>> >>> install from the current binary image which is now
>> rgl_0.92.861.tgz,
>> >>> I got apparent success, it loads without error, and the
>> example in
>> >>> ?rgl runs.
>> >>>
>> >>> -- >>>
>> >>> David Winsemius, MD
>> >>> West Hartford, CT
>> >>>
>> >>
>> >
>>
>