Noel Faux
2011-Oct-04 23:14 UTC
[R] ggplot2: not displaying annotation (label = expression) in/on graph
Hi all, I am trying to print some generated text on plot which is comprised of text and the value of a variable. Thanks to the response from Joshua Wiley <jwiley.psych@gmail.com> on the thread "How to format R superscript 2 followed by "=" value, I can now get R^2 = value. However with the following code: ggplot(blData, aes(x = xData, y = yData)) + geom_point(aes(colour = factor(diagnosis))) + geom_smooth(method = "lm") + opts(legend.position = c(0.75, 0.25)) + scale_colour_discrete(name = "Diagnosis") + labs(x = r2format(t0.lm, output = "R^2 == rval", sub = "rval")) + #"Baseline - Automated", y = "Baseline - Manual") + annotate("text", x = 1.35, y = 2.5, label = r2format(t0.lm, output = "R^2 == rval", sub = "rval")) #paste("R^2 = ", t0.rsq, sep = "")) I can get the text on the x-axis OK, but the annotation in the plot does not show up. If I replace the label with the commented out section, the text shows on the graph. Here is a repost of Joshua's code: ################################ ## function definition r2format <- function(object, digits = 3, output, sub, expression = TRUE, ...) { if (inherits(object, "lm")) { x <- summary(object) } else if (inherits(object, "summary.lm")) { x <- object } else stop("object is an unmanageable class") out <- format(x$r.squared, digits = digits) if (!missing(output)) { output <- gsub(sub, out, output) } else { output <- out } if (expression) { output <- parse(text = output) } return(output) } Is there an option I have missed? Many thanks, Noel Faux ---- NHMRC Post Doctoral Fellow Australian Imaging Biomarker Lifestyle (AIBL) flagship Mental Health Research Institute The University of Melbourne ---- 155 Oak St, Parkville Victoria 3052 Australia T: +613 9389 2943 ---- National Neuroscience Facility Level 3, Alan Gilbert Building 161 Barry Street, Carlton Victoria 3010 Australia T: +613 8344 1944 e-mail: nfaux@unimelb.edu.au www.mhri.edu.au biocoder: http://biocoders.net/members/nfaux/ ---------------- This email and any attachments are confidential. They ma...{{dropped:14}}