Hi,
I am still learning and find it very helpful in my research. I have searched 
before posting this and could not figure out if there is a way to compare 
matrices the way i am describing below:
I have a matrix of 64 cols and 64 rows which mostly has lots of zeros but has 
other non-zero positive integers (usually grouped close to each other) in the 
matrix. I use persp to get a 3d plot and it looks like a mountain with its peak 
roughly in the center. I have several such matrices all 64-by-64 but with 
different integers in the matrix such that the mountains look very different.
Problem:
If I overlay one 64-by-64 matrix over another, there will be many differences in
the mountains (such as, height[this is easy], shift towards one direction, 
surface area[PeakArea from library sp], circumference), I want to quantify those
differences. I have some of them figured out but want your inputs to this. I 
want to be able to compare several mountains with one another and rate them for 
similarity/differences with one another.  
Any help would be great.
Thanks,
Ab