Hi I'm a problem with installing "rJava" in Linux I have got in my system : java-sun, java-sun-tools, java-sun-jre but if I wont install rJava I got a problem like this:> install.packages("rJava", dependencies = TRUE)--- Please select a CRAN mirror for use in this session --- trying URL 'http://cran.mirroring.de/src/contrib/rJava_0.8-2.tar.gz' Content type 'application/x-gzip' length 471971 bytes (460 Kb) opened URL =================================================downloaded 460 Kb * installing *source* package ?rJava? ... checking for gcc... i686-pld-linux-gcc -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-pld-linux-gcc -std=gnu99 accepts -g... yes checking for i686-pld-linux-gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... i686-pld-linux-gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether i686-pld-linux-gcc -std=gnu99 supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver : '/usr/bin/jar' compiler : '' header prep.: '' cpp flags : '~autodetect~' java libs : '-L/usr/lib/jvm/java-sun-1.6.0.18/jre/lib/i386/server -L/usr/lib/jvm/java-sun-1.6.0.18/jre/lib/i386 -L/usr/lib/jvm/java-sun-1.6.0.18/jre/../lib/i386 -L -L/usr/java/packages/lib/i386 -L/lib -L/usr/lib -ljvm' configure: error: Java Development Kit (JDK) is missing or not registered in R Make sure R is configured with full Java support (including JDK). Run R CMD javareconf as root to add Java support to R. If you don't have root privileges, run R CMD javareconf -e to set all Java-related variables and then install rJava. ERROR: configuration failed for package ?rJava? * removing ?/usr/lib/R/library/rJava? The downloaded packages are in ?/root/tmp/RtmpA0Qvcf/downloaded_packages? Updating HTML index of packages in '.Library' Warning message: In install.packages("rJava", dependencies = TRUE) : installation of package 'rJava' had non-zero exit status>What is wrong? -- View this message in context: http://n4.nabble.com/install-rJava-in-linux-tp1579395p1579395.html Sent from the R help mailing list archive at Nabble.com.
On Fri, Mar 5, 2010 at 4:41 AM, Grze? <gregorio99 at gmail.com> wrote:> > Hi > I'm a problem with installing "rJava" in Linux > > I have got in my system : java-sun, java-sun-tools, java-sun-jre > but if I wont install rJava I got a problem like this: > >> ?install.packages("rJava", dependencies = TRUE) > --- Please select a CRAN mirror for use in this session --- > trying URL 'http://cran.mirroring.de/src/contrib/rJava_0.8-2.tar.gz' > Content type 'application/x-gzip' length 471971 bytes (460 Kb) > opened URL > =================================================> downloaded 460 Kb > > * installing *source* package ?rJava? ...<snip>> configure: error: Java Development Kit (JDK) is missing or not registered in > R > Make sure R is configured with full Java support (including JDK). Run > R CMD javareconf > as root to add Java support to R. > > If you don't have root privileges, run > R CMD javareconf -e > to set all Java-related variables and then install rJava.Start by following these instructions. Make sure you have some version of JDK installed (use your distributions package management system to install it if needed) then run R CMD javareconf as instructed above. Best, Ista> > ERROR: configuration failed for package ?rJava? > * removing ?/usr/lib/R/library/rJava? > > The downloaded packages are in > ? ? ? ??/root/tmp/RtmpA0Qvcf/downloaded_packages? > Updating HTML index of packages in '.Library' > Warning message: > In install.packages("rJava", dependencies = TRUE) : > ?installation of package 'rJava' had non-zero exit status >> > ?What is wrong? > -- > View this message in context: http://n4.nabble.com/install-rJava-in-linux-tp1579395p1579395.html > Sent from the R help mailing list archive at Nabble.com. > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Ista Zahn Graduate student University of Rochester Department of Clinical and Social Psychology http://yourpsyche.org