Dear All, I am running Debian testing on my box and I have R 2.9.0 installed from the standard repositories. I downloaded the package source from http://cran.r-project.org/web/packages/Cairo/index.html but when I try to install it on my system, this is what I get $ sudo R CMD INSTALL Cairo_1.4-4.tar.gz * Installing to library ?/usr/local/lib/R/site-library? * Installing *source* package ?Cairo? ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for pkg-config... /usr/bin/pkg-config checking whether pkg-config knows about cairo... yes checking for configurable backends... cairo cairo-ft cairo-pdf cairo-png cairo-ps cairo-xlib cairo-xlib-xrender configure: CAIRO_CFLAGS=-D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 checking if R was compiled with the RConn patch... no checking cairo.h usability... yes checking cairo.h presence... yes checking for cairo.h... yes checking for PNG support in Cairo... yes checking for ATS font support in Cairo... no configure: CAIRO_LIBS=-lfreetype -lfontconfig -lpng12 -lz -lXrender -lcairo -lX11 checking for library containing deflate... none required checking whether Cairo programs can be compiled... yes checking whether cairo_image_surface_get_format is declared... no checking for FreeType support in cairo... yes checking whether FreeType needs additional flags... no checking wheter libjpeg works... yes checking wheter libtiff works... no configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/cconfig.h ** libs gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c cairobem.c -o cairobem.o gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c cairogd.c -o cairogd.o gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c cairotalk.c -o cairotalk.o gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c img-backend.c -o img-backend.o gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c img-jpeg.c -o img-jpeg.o gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c img-tiff.c -o img-tiff.o gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c pdf-backend.c -o pdf-backend.o gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c ps-backend.c -o ps-backend.o gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c svg-backend.c -o svg-backend.o gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c w32-backend.c -o w32-backend.o gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c xlib-backend.c -o xlib-backend.o xlib-backend.c:34:74: error: X11/Intrinsic.h: No such file or directory xlib-backend.c: In function ?Rcairo_init_xlib?: xlib-backend.c:158: warning: implicit declaration of function ?XrmUniqueQuark? make: *** [xlib-backend.o] Error 1 ERROR: compilation failed for package ?Cairo? * Removing ?/usr/local/lib/R/site-library/Cairo? Is there a header file missing? Or is there anything wrong with my system? Many thanks Lorenzo
On 22 May 2009 at 13:42, Lorenzo Isella wrote:
| Dear All,
| I am running Debian testing on my box and I have R 2.9.0 installed from
| the standard repositories.
| I downloaded the package source from
| http://cran.r-project.org/web/packages/Cairo/index.html
| but when I try to install it on my system, this is what I get
|
| $ sudo R CMD INSTALL Cairo_1.4-4.tar.gz
| * Installing to library ?/usr/local/lib/R/site-library?
| * Installing *source* package ?Cairo? ...
| checking for gcc... gcc -std=gnu99
[...]
| gcc -std=gnu99 -I/usr/share/R/include -D_REENTRANT -I/usr/include/cairo
| -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb
| -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fpic -g -O2 -c
| xlib-backend.c -o xlib-backend.o
| xlib-backend.c:34:74: error: X11/Intrinsic.h: No such file or directory
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
edd at ron:~$ dpkg -S `locate Intrinsic.h`
libxt-dev: /usr/include/X11/Intrinsic.h
edd at ron:~$
| xlib-backend.c: In function ?Rcairo_init_xlib?:
| xlib-backend.c:158: warning: implicit declaration of function
| ?XrmUniqueQuark?
| make: *** [xlib-backend.o] Error 1
| ERROR: compilation failed for package ?Cairo?
| * Removing ?/usr/local/lib/R/site-library/Cairo?
|
| Is there a header file missing? Or is there anything wrong with my system?
| Many thanks
Please run 'sudo apt-get install libxt-dev' and try again.
Dirk
--
Three out of two people have difficulties with fractions.