zoe zhang
2009-Apr-07 16:55 UTC
[R] survival time ties and memory issue with aalen{timereg}.
Dear R-helpers: I am trying to use aalen{timereg} to run a model and found that it generates the following message. the data set I used is> dim(indf)[1] 13743 10 #R code: fit_aalen <- aalen(Surv(durdxdeathp, die) ~ 1+factor(gender), indf) #start of error message below Non unique survival times: break ties ! Break ties yourself Error in aalenBase(times, ldata, X, status, id, clusters, robust = robust, : Calloc could not allocate (13840 of 8) memory Calls: aalen -> aalenBase -> .C In addition: Warning message: In aalenBase(times, ldata, X, status, id, clusters, robust = robust, : Reached total allocation of 1535Mb: see help(memory.size) Calls: aalen -> aalenBase -> .C #end of error messagea. So, my questions are (1) how to solve the non unique survival times problem? Should I jitter the survival time by a little bit to break ties, or more elegant solution exist? (2) In general, how to solve memory problem? set robust=0 may help based on the pdf document. Any other suggestions? I am new to R, your help will be highly appreciated! Many thanks in advance. -mary [[alternative HTML version deleted]]