similar to: CRAN (and crantastic) updates this week

CRAN (and crantastic) updates this week New packages ------------ * apcluster (1.0.1) Ulrich Bodenhofer http://crantastic.org/packages/apcluster The apcluster package implements Frey's and Dueck's Affinity Propagation clustering in R. The algorithms are analogous to the Matlab code published by Frey and Dueck. * BioPhysConnectoR (1.6-1) Franziska Hoffgaard

CRAN (and crantastic) updates this week New packages ------------ * EffectStars (1.0) Maintainer: Unknown Author(s): Gunther Schauberger License: GPL-2 http://crantastic.org/packages/EffectStars The package provides functions to visualize regression models with categorical response. The effects of the covariates are plotted with star plots in order to allow for an optical

CRAN (and crantastic) updates this week New packages ------------ Updated packages ---------------- New reviews ----------- This email provided as a service for the R community by http://crantastic.org. Like it? Hate it? Please let us know: cranatic at gmail.com.

CRAN (and crantastic) updates this week New packages ------------ * DCGL (1.0) Bao-Hong Liu http://crantastic.org/packages/DCGL Functions for basic differential coexpression analyses: gene filtering, link filtering, DCG (Differentially-Coexpressed Gene) identification and DCL (Differentially-Coexpressed Links) identification.Two algorithms,named DCP and DCe, are provided for

CRAN (and crantastic) updates this week New packages ------------ * bdoc (1.0) Michael Anderson http://crantastic.org/packages/bdoc This package contains a function that will classify DNA barcodes as well as a few test and reference data sets. * bdsmatrix (1.0) Terry Therneau http://crantastic.org/packages/bdsmatrix This is a special case of sparse matrices, used by coxme and

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

CRAN (and crantastic) updates this week New packages ------------ * disclapmix (0.1) Maintainer: Mikkel Meyer Andersen Author(s): Mikkel Meyer Andersen and Poul Svante Eriksen License: GPL-2 http://crantastic.org/packages/disclapmix disclapmix makes inference in a mixture of Discrete Laplace distributions using the EM algorithm. * EstSimPDMP (1.1) Maintainer: Unknown Author(s):

CRAN (and crantastic) updates this week New packages ------------ * bisectr (0.0.2) Maintainer: Winston Chang Author(s): Winston Chang <winston at stdout.org> License: GPL-2 http://crantastic.org/packages/bisectr Tools to find bad commits with git bisect * CUMP (1.0) Maintainer: Xuan Liu Author(s): Xuan Liu <liuxuan at bu.edu> and Qiong Yang <qyang at bu.edu>

CRAN (and crantastic) updates this week New packages ------------ * allan (1.0) Alan Lee http://crantastic.org/packages/allan Automates Large Linear Analysis Model Fitting * andrews (1.0) Jaroslav Myslivec http://crantastic.org/packages/andrews Andrews curves for visualization of multidimensional data * anesrake (0.3) Josh Pasek http://crantastic.org/packages/anesrake This

Hi, As some of you know, one of the R Projects ideas for GSOC 2009 is to expand the crantastic.org portal. Some ideas for what should be done is mentioned in Hadley Wickham's project description [1], others have been briefly mentioned on this mailing list before. Undoubtedly, however, there are many other good ideas out there that could be implemented. Please suggest any ideas you might have

Does anyone know the appropriate R code to obtain census tracts (tract and block level) from addresses by using Zack Almquist's USCensus2000 package? Thank you, -- Michael Leitson Michael.Leitson at gmail.com

Under the "further resources" section I'd like to suggest the following addition : * http://crantastic.org/ lists popular packages according to other users votes. Consider briefly reviewing the top 30 packages before posting to r-help since someone may have already released a package that solves your problem. Thats just a straw man idea so I hope there will be answer, or

Hi everybody. I'm using BFAST program and I have some data to be analized (named "META.csv" for example). When I call BFAST in the following way: meta <- read.csv("C:/META.csv") meta.ts<-ts(meta, frequency=12, start = c(2005,9)) dis<-frequency(meta.ts) / length(meta.ts) meta.sc<-bfast(meta.ts, h=dis, max.iter=1) meta.sc$output The last statement has the

Hey guys. I''ve just found some odd behaviour within RSpec 1.1.12 , and would like to know whether this is a bug, or I''m doing something wrong. When I give multiple return values to a stub, like this: SubtitleFile.stub!(:new).and_return @sf1, @sf2 RSpec complains: Mock ''SubtitleFile_1001'' received unexpected message :size with (no args) However, if I

On 04/27/16 13:21, Pouar wrote: > On 04/27/16 08:49, William A. Mahaffey III wrote: >> On 04/26/16 21:13, John R Pierce wrote: >>> On 4/26/2016 6:45 PM, Jack Bailey wrote: >>>> Today someone in a meeting claimed the Bourne shell is deprecated, >>>> one of the reasons being it supposedly has security issues. Well >>>> that's all news to me,

>>> >>last OS I can think of with an actual Bourne shell was Solaris. >>> >> >>> >> >> > >> >The various *BSD's have & use the actual Bourne shell .... >> > >> > > Which one? All the BSDs I know of use the Almquist Shell except for > OpenBSD which uses a patched version of the Public Domain Korn Shell

On 04/26/16 21:13, John R Pierce wrote: > On 4/26/2016 6:45 PM, Jack Bailey wrote: >> >> Today someone in a meeting claimed the Bourne shell is deprecated, >> one of the reasons being it supposedly has security issues. Well >> that's all news to me, and I cannot find anything online to >> corroborate the claim. Is this true, is it a bash vs. Bourne FUD, or

I'm trying to generate 50+ graphs using the UScensus2000tract data. I need to access the data for just about all of the states, so I was hoping to create a simple loop that will take the relevant state from my data and load the associated census data from the UScensus2000tract package. Below is a sample of what I'm trying to do. Any suggestions are much appreciated.

Hi all, Here's my idea for the google summer of code - it's a resubmission from last year. We had a couple of interested students, but their proposals weren't quite competitive enough to get funding. Regards, Hadley Summary: Create an information portal for the fast growing list of R packages, integrating package documentation and journal publications with feedback from the useR

Dear all, I'm having difficulty getting access to data generated by survfit and print.survfit when they are using with a Cox model (survfit.coxph). I would like to programmatically access the median survival time for each strata together with the 95% confidence interval. I can get it on screen, but can't get to it algorithmically. I found myself examining the source of print.survfit to