similar to: install failure Ruuid package on OS X

> source("http://www.bioconductor.org/biocLite.R") > biocLite(c("Ruuid")) Running getBioC version 0.1.6 with R version 2.3.1 Running biocinstall version 1.8.4 with R version 2.3.1 Your version of R requires version 1.8 of Bioconductor. trying URL 'http://bioconductor.org/packages/1.8/bioc/src/contrib/Ruuid_1.10.0.tar.gz' Content type 'application/x-gzip'

Hi, I get an error indicating a missing library from the package 'Ruuid'. I suppose this means I should install RGtk. I just thought I'd document the error. Maybe a dependency entry is missing? R 2.9.0 OS X 10.5.8 Thanks, - chris > biocLite('Ruuid') Using R version 2.9.0, biocinstall version 2.4.12. Installing Bioconductor version 2.4 packages: [1] "Ruuid"

Dear R-helpers, I'm trying to transfer a loop from R code to C to improve performance using the .Call interface. However, I ran into problems before even getting started, and I hope (fear) I'm missing something completely obvious here. I use the following C function (passing an integer to the C function and printing it): #include <R.h> #include <Rinternals.h> SEXP

Hello ... I would like to direct people's attention to the package "Ruuid" on the Biconductor website (http://www.bioconductor.org/repository/devel/package/html/Ruuid.html). It's purpose is to generate UUID values, and has a simple R interface (currently one function: getuuid(), with multiple options). Under unix, it uses Theodore Ts'o's libuuid to create and manage

Hi Everybody, I am having a problem with loading Biobase package. I typed 2 lines below at R prompt > source ("http://boconductor.org/biocLite.R") > biocLite (lib="/usr/local/lib/R/library") which attempted to install a bunch of packages with varying degree of success. Out of 29, 13 failed. Biobase is one of them. As a matter of fact, when I looked at logs, most

Hi, folks. I was wondering if any of you could point me in the right direction. Using R 3.3.3 (and later), on an IBM Power LPAR, Red Hat 7 PPC64le, markdown build fails as below. > install.packages("markdown") trying URL 'https://cloud.r-project.org/src/contrib/markdown_0.8.tar.gz' Content type 'unknown' length 80583 bytes (78 KB)

Hello, I work with two packages sna and graph from CRAN resp. Bioconductor. Both packages have a function called "degree". Therefore one of the functions is masked by the other and which one gets called depends on the order of loading. The problem is that both package do not have a namespace, therefore calling the masked function with "package::degree" does not work.

Hi All, Does someone have an idea of how to cleverly convert a categorical timeseries into a transition matrix? Ie, I have something like: x<- c(1,1,2,1,1,2,2,2,1,2), And I want a matrix with counts and/or probabilities: > tr <- matrix(c(2,3,2,2),2,2) > tr [,1] [,2] [1,] 2 2 [2,] 3 2 Meaning that there are two transitions from 1 to 1, two from 1 to 2, three from 2 to 1

hello list when I run the step make for update my samba4 I have the follow warning warning: The current binary is a PIE (Position Independent Executable), which GDB does NOT currently support. Most debugger features will fail if used in this session. libndr.so: symbol ndr_transfer_syntax_ndr64 has changed - please update major version old_signature: uuid = {time_low = 1903232307,

I have developed a problem with the postscript output of plot on Windows. My code still works properly with R 2.3 but, with R 2.4, the white text on red background does not show up. It does, however, show up when output is sent to the screen. Below is my code and sessionInfo. R version 2.4.0 Under development (unstable) (2006-08-29 r39012) i386-pc-mingw32 locale: LC_COLLATE=English_United

Hi, I'm receiving an error when I am trying to install rJava. I have posted the error below. RHive_0.0-6.tar.gz rJava_0.9-3.tar.gz RJDBC_0.2-0.tar.gz Rserve_0.6-8.tar.gz [root at localhost Package]# R CMD INSTALL rJava_0.9-3.tar.gz * installing to library ?/usr/local/lib64/R/library? * installing *source* package ?rJava? ... ** package ?rJava? successfully unpacked and MD5 sums checked

Hi again, I have been playing around with the order of loading packages, and as far as I can tell, there's nothing specific with affycoretools that's causing my Rgui to crash (i.e., shuts down and the Microsoft 'please send error report' box pops up). Instead, it has something to do with the order & type of packages that are loaded that add items to the menu bar by

Hi, I'm currently R porting SF Mersenne Twister algorithm of Matsumoto and Saito. To get the full power of their code, I want to use their fonction fill_array32 which need aligned memory. That is to say I need to use the C function memalign on windows, posix_memalign on linux and classic malloc on Mac OS. In 'writing R extenstion', they recommand to use R_alloc function to

Hi, I'm currently R porting SF Mersenne Twister algorithm of Matsumoto and Saito. To get the full power of their code, I want to use their fonction fill_array32 which need aligned memory. That is to say I need to use the C function memalign on windows, posix_memalign on linux and classic malloc on Mac OS. In 'writing R extenstion', they recommand to use R_alloc function to

Hi, Who should I ask about my package Rigroup_0.83 being moved to Archive status on CRAN and no longer available via install.package? I have no problems with the move if this was simply because of low demand. However, if there was a build issue with the newest releases that caused problems, I would be happy to address it. I'll just ask my students to install it from my own locally hosted

"btrfs subvolume list" gets a new option "--fields=..." which allows to specify which pieces of information about subvolumes shall be printed. This is necessary because this commit also adds all the so far missing items from the root_item like the received UUID, all generation values and all time values. The parameters to the "--fields" option is a list of items to

Hi, I want to call R from within Java, using jri as per http://www.rosuda.org/software/jri/ So I am following the instructions in the README file for JRI 0.2-4. I have run 'sh configure.win' and 'make' and they seemed to be successful. (See below for the output from make, for example.) But when I try 'run.bat rtest' (with and without R command line arguments) the output

Hi, When running R CMD check I'm getting a number of errors that I don't quite follow and don't know where to start looking for an answer, any hints appreciated. R CMD check trunk * checking for working latex ... OK * using log directory '/Users/ivisser/Documents/projects/ depmixProject/depmixNew/rforge/depmix/trunk.Rcheck' * using R version 2.6.2 (2008-02-08) * checking

Hola buenas, utlimamente estoy teniendo más problemas con mi equipo de los que debería. Bajo windows no me funciona bien Rstudio y bajo linux soy incapaz de instalar rJava. ¿Alguien que sepa de Linux me podría ayudar? He probado a instalar los openJDK y nada. También he probado, para instalar Java, a hacer un: sudo add-apt-repository ppa:webupd8team/java sudo apt-get update && sudo

Hi How do I install "gregmisc" packages? I did- % sudo R > install.packages("gregmisc") . . > barplot2() but, Error: couldn't find function "barplot2" -- atuya Mac OSX 10.2.6 R 1.7.1