similar to: issue with update.packages()

R-helpers: I just updated from R 7.0 to R 7.2.2 today. I am using MAC OS X version 10.5.4 on a Macbook to run R. ---------------------------- > sessionInfo() R version 2.7.2 (2008-08-25) i386-apple-darwin8.11.1 locale: en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace

Dear R Users, Is there a known problem with downloading packages robustbase and tseries from the UK CRAN website ? Thanks in advance, Tolga ========================================================= R version 2.7.1 (2008-06-23) Copyright (C) 2008 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to

Hi All, I tried to install AnnotationDBI like so: source("http://bioconductor.org/biocLite.R") biocLite("AnnotationDbi") and got this error: .... Loading required package: RSQLite Error in dyn.load(file, ...) : unable to load shared library '/RHEL3/local/lib64/R/library/ RSQLite/libs/RSQLite.so': /RHEL3/local/lib64/R/library/RSQLite/libs/RSQLite.so: undefined

Hi, While trying to install hgu133acdf- windows package in R im getting the following error and unable to install the same. > source("http://bioconductor.org/biocLite.R") > biocLite("hgu133acdf") Using R version 2.10.0, biocinstall version 2.5.10. Installing Bioconductor version 2.5 packages: [1] "hgu133acdf" Please wait... trying URL '

Hello all, I keep on getting the following error message when I try downloading statmod: > install.packages("statmod") Installing package(s) into ‘C:\Users\Isaac\Documents/R/win-library/2.12’ (as ‘lib’ is unspecified) trying URL ' http://www.revolution-computing.com/cran/bin/windows/contrib/2.12/statmod_1.4.9.zip ' Error in download.file(url, destfile, method, mode =

FYI, I plan on implementing this for F31 if no issues arise. ---------- Forwarded message --------- From: Ben Cotton <bcotton at redhat.com> Date: Tue, 2 Jul 2019 at 10:55 Subject: Fedora 31 System-Wide change proposal: Automatic R runtime dependencies To: <devel-announce at lists.fedoraproject.org>, Development discussions related to Fedora <devel at lists.fedoraproject.org>

Hi All, I tried to install AnnotationDBI like so: source("http://bioconductor.org/biocLite.R") biocLite("AnnotationDbi") and got this error: .... Loading required package: RSQLite Error in dyn.load(file, ...) : unable to load shared library '/RHEL3/local/lib64/R/library/ RSQLite/libs/RSQLite.so': /RHEL3/local/lib64/R/library/RSQLite/libs/RSQLite.so: undefined

mogene10stprobeset.db is generated with AnnotationDbi for mouse gene array. I don't find a package that seems generated by AnnotationDbi for exon arrays on the webpage you mentioned. Is it correct? On Tue, Oct 27, 2009 at 7:00 PM, Marc Carlson <mcarlson at fhcrc.org> wrote: > Hi Peng, > > I am not completely clear from your post what you want. ?But most of our > annotation

Although I have installed R many times on many machines without problems, I have recently encountered a problem with accessing packages. R has been installed successfully with the "--internet2" option. The session info is below. > sessionInfo() R version 2.8.1 (2008-12-22) i386-pc-mingw32 locale: LC_COLLATE=English_United States.1252;LC_CTYPE=English_United

My conception of how NAMESPACE and methods in R-2.7.0 resolved a generic 'func' to a func-method was to search as follows: In 2.7.0: func --> NAMESPACE, including Imports: (and other details) --> .GlobalEnv, and eventually Depends: since these are on search() In R-devel it seems like func --> NAMESPACE, including Imports: (and other details) --> ?? but not

Hi all, I just installed R 2.4.1 and tried to install the package 'sp' working down from the 'Packages' menu in the R GUI. The package would not install and I got the following message: &quot;trying URL 'http://cran.us.r-project.org/bin/windows/contrib/2.4/sp_0.9-10.zip' Error in download.file(url, destfile, method, mode = &quot;wb&quot;) : cannot

Can anyone help with this - I have been running glmer code for linear mixed models on my works pc, and am now working on my laptop (which is vista) and when I load the lme4 package i get the message below and I cannot run any models - any one have any ideas? Emma trying URL 'http://cran.uk.r-project.org/bin/windows/contrib/2.8/Matrix_0.999375-21.zip' Error in download.file(url,

We are several seeing this one. It's a known bug, cf. https://stat.ethz.ch/pipermail/r-devel/2015-January/070513.html Henrik On Mon, Jan 26, 2015 at 9:54 AM, John Fox <jfox at mcmaster.ca> wrote: > Dear all, > > I've noticed the following problem for the past several days: > > ---------------- snip ---------------- >> update.packages(ask=FALSE) > > . . .

It works again using: % R --version R Under development (unstable) (2015-01-26 r67627) -- "Unsuffered Consequences" Copyright (C) 2015 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) /Henrik On Mon, Jan 26, 2015 at 9:54 AM, John Fox <jfox at mcmaster.ca> wrote: > Dear all, > > I've noticed the following problem for the past

Hello All R-Gurus: ISSUE: Cannot view R vignettes due in Ubuntu Linux (a debian variant). note: this issue has been posted to this list before with no responses given see https://stat.ethz.ch/pipermail/r-help/2007-September/141178.html DETAILS: I am trying to view an R vignette. Here is the situation: I issue the openvignette(), then select the vignette I wish to view...and the system returns:

Trying to install the Matrix package with install.packages fails for me on Linux, it is trying to fetch the wrong version 0.99-4, downloading the tgz which is 0.99-6 and using R CMD INSTALL works fine The output from the failed install was > install.packages(c("Matrix")) trying URL 'http://cran.uk.r-project.org/src/contrib/Matrix_0.99-4.tar.gz' Error in

Hi, First a bit of disclaimer... I haven't isolated this problem into an easy to reproduce case, and I won't be surprised if the root cause is a fault in my code's use of name spaces or some such. The error I'm seeing is one in which the desired method is not found. What worries me in terms of my expectations of how to debug the problem is that showMethods and selectMethod both

On Tue, Mar 21, 2023 at 07:04:59AM +0100, Laszlo Ersek wrote: > On 3/20/23 20:41, Eric Blake wrote: > > On Sun, Mar 19, 2023 at 10:41:37AM +0100, Laszlo Ersek wrote: > >> This is version 4 of the following sub-series: > >> > >> [libnbd PATCH v3 09/29] lib/utils: introduce async-signal-safe execvpe() > >> [libnbd PATCH v3 10/29] lib/utils: add unit tests

On Sun, Mar 19, 2023 at 10:41:37AM +0100, Laszlo Ersek wrote: > This is version 4 of the following sub-series: > > [libnbd PATCH v3 09/29] lib/utils: introduce async-signal-safe execvpe() > [libnbd PATCH v3 10/29] lib/utils: add unit tests for async-signal-safe execvpe() > > http://mid.mail-archive.com/20230215141158.2426855-10-lersek at redhat.com >

----- Original Message ----- > From: "Henrik Bengtsson" <hb at biostat.ucsf.edu> > To: "John Fox" <jfox at mcmaster.ca> > Cc: "R-devel" <r-devel at r-project.org> > Sent: Tuesday, January 27, 2015 10:15:36 AM > Subject: Re: [Rd] problem with update.packages() in R-Devel (3.2.0) on Windows > > It works again using: > > % R