similar to: Install package 'Matrix' problem

Dear Developers, motivated by the new Sun Studio checks I compiled R-devel and several of our packages with Sun Studio 12 on Fedora x64. Everything worked fine and R-devel runs, with the exception of package Matrix where compilation crashes with the following message. The error occurs during building of the recommended packages and also if Matrix is compiled separately: [...] CC -G -lCstd

Hi, we have installed R-2.8.1 using the current pgi compiler (8.0.2) for AMD64 on a SLES9 system. When I try to install "Matrix" everything is fine until the last step. make[1]: Leaving directory `/tmp/R.INSTALL.TW3399/Matrix/src/AMD' pgCC -L/usr/lib64 -L/usr/X11R6/lib64 -pgf90libs -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o

Hi all, I have trouble to compile Matrix packages on Solar10 x86-64 with Sun compilers. I saw some postings on this but am not sure how to solve this problem. It is becoming critical as I cannot install biocLite() because of its dependency on Matrix. Could you direct me how to resolve the issue? Thanks in advance! Dongseok R version 2.8.1 (2008-12-22) Copyright (C) 2008 The R Foundation for

Hi list, I tried to install MCMCpack to R-2.12.0, got the following error, CC -m64 -library=stlport4 -I/apps/sparcv9/R-2.12.0/lib/R/include -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DHAVE_TRUNC -DHAVE_IEEEFP_H -I/opt/csw/include -KPIC -g -c MCMCSVDreg.cc -o MCMCSVDreg.o "error.h", line 598: Error: The function "abort" must have a prototype.

Full_Name: Bob Bownes Version: 2.9.2 OS: Solaris 10 Submission from: (NULL) (164.55.254.106) The sed lines in src/unix/Makefile confuse the grep distributed with Solaris that gets configured by ./configure. Switching from a separator of ':' to a separator of ',' fixes the problem. 76,77c76,77 < @$(SED) -e "s:@rhome:$(rhome):" -e

Hi, I have been trying to install the Matrix package on R running in Linux (Fedora). But, I get the following error message (at the bottom). I am logged in as the root user. Any help would be appreciated! Thanks! -Hyunseung Kang * Installing *source* package 'Matrix' ... Using GNU make for building the package ** libs ** arch - gcc -m32 -std=gnu99 -I/usr/include/R

Hi all, I'm unable to compile R under an HPC system (which like many HPC systems doesn't always have the latest and greatest software). The version of GCC is 4.1.2 under CentOS 5.7. Running ./configure gives the following output: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /home/tbarik C compiler: gcc

I'm using package Matrix, which I have installed on several flavours of linux system. But on an important solaris install, I can't make it work. Initially, I thought the problem was using 'make' instead of 'gmake', but I masked around that, and still get errors. Those new errors seem to be related to 'cc' wanting some optional extras that I don't have

The bulk is on my forums - the final post for today is: Results to date: A. It looks like I am going to need a newer compiler for C - xlc/xlC V11 apparently does not understand this code: "/data/prj/cran/R-3.2.3/src/main/memory.c", line 2149.31: 1506-046 (S) Syntax error. I will have to check if R-devel has different code before asking for assistence. +2139 #ifdef

Hi, I am trying to compile R 1.9.1 and 2.0.0 on Solaris 2.8 with Sun Studio Fortran 95 compiler but I have obtained some errors which I enclose. I have compiled R with g77 GNU compiler and it was OK. Does anyone know if R 2.0.0 has been successfully built on Solaris 2.8 with Sun Studio Fortran 95 compiler? or at least, How could I achieve this? The R installation manual does not have any

Hmnnn... This is the third version of R I have installed and I am stumped on this one. There is some unresolved external I cannot find... /opt/SUNWspro/bin/cc -v -o R.bin CConverters.o Rdynload.o RNG.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o devPS.o devPicTeX.o deparse.o

Dear listers, I have update to rtools43 and, using R 4.2.3 I have been surprised not to be able to compile packages needing compilation when updating. Looks like the path given in gcc? -I"C:/PROGRA~1/R/R-42~1.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"???? -O2 -Wall? -std=gnu99 -mfpmath=sse

Hi, all, We just got the Sun Performance Library for our Suns running Solaris 2.6, and I read the relevant section of the "R Installation and Administration Manual" about configuring R to use BLAS. The manual suggests you must use Sun's "cc" and "f95" (maybe "f90"?) compilers in order to use the Performance Library. We have "cc" but not

Dear developers, today I tried to build and install R-devel_2009-01-10 on FreeBSD 8.0-CURRENT (i386) for testing purposes. All went well until compiling the now recommended (integrated) Matrix package. At this point the following break occured: ------------------------------------------------ begin installing recommended package Matrix * Installing *source* package 'Matrix' ... **

Hi, I am having trouble compiling R-2.10.0 on the Solaris x86_64 platform using the native solaris-studio cc/F99 compilers. I am pretty sure that I have all my environment set up for a 64-bit compile. However, when doing a make I get the following error: /opt/solstudio12.2/bin/cc -m64 -I./api -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -KPIC -xO3 -c

All: Attached is the output file from building R 2.10.0 on RedHat Linux. I have never previously experienced any problems when building R from source with new releases. But, now I get a compile error with the Matrix package: CHOLMOD/Include/cholmod.h:87:22: error: UFconfig.h: No such file or directory make[3]: *** [CHMfactor.o] Error 1 make[3]: Leaving directory

Hello R Help, I am attempting to install/build a 64-bit version of R to hopefully resolve some memory.limit problems for a user who is running a simulation. The 'configure' runs fine and the compilation (make) runs fine until the very last part (see below). I have libiconv in /usr/local/lib (no sure why I am getting the referencing error). The config.site file is attached. ANY HELP YOU

System details: -------------- Sun Blade 1000, Solaris 8, Sun ONE Compiler Suite (rebranded Forte 7), R versions 1.6.0 and 1.6.2 - suspect others are affected, too Problem description: ------------------- Using the recommended env var setting from p.15 of the Admin Guide, the configure script fails the sgemm sunperf test, even though the sunperf libraries are available Not linking with

Hi R usrs, I want to build R-2.10.0 on HP-UX, but I got following error message: ld: Unsatisfied symbol "zgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "zgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] ld: Unsatisfied symbol "zherk" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "ztrsm" in file

Doh! turns out I was using a newer feature of S-PLUS that is not supported in R, or at least was generating the parse error. replace all a = b with a <- b (except in arguments, naturally ...) Sorry to bother anyone ... smooth sailing ahead. > Date: Mon, 4 Jun 2001 10:03:56 -0600 (MDT) > From: Tim Hoar <thoar at cgd.ucar.edu> > Reply-To: Tim Hoar <thoar at ucar.edu>