Full_Name: Bob Bownes Version: 2.9.2 OS: Solaris 10 Submission from: (NULL) (164.55.254.106) The sed lines in src/unix/Makefile confuse the grep distributed with Solaris that gets configured by ./configure. Switching from a separator of ':' to a separator of ',' fixes the problem. 76,77c76,77 < @$(SED) -e "s:@rhome:$(rhome):" -e "s:@rincludedir:$(rincludedir):" \ < -e 's:@libsprivate:$(STATIC_LIBR_PC):' \ ---> @$(SED) -e "s, at rhome,$(rhome)," -e "s, at rincludedir,$(rincludedir)," \ > -e 's, at libsprivate,$(STATIC_LIBR_PC),' \
On Thu, 10 Sep 2009, bownes at gmail.com wrote:> Full_Name: Bob Bownes > Version: 2.9.2 > OS: Solaris 10 > Submission from: (NULL) (164.55.254.106) > > > The sed lines in src/unix/Makefile confuse the grep distributed with Solaris > that gets configured by ./configure.Well, it calls sed not grep! Which version was that -- it works for me and for several others. I have SED = /usr/xpg4/bin/sed (see file Makeconf), and that is 'distributed with Solaris': perhaps you do not have it installed? The danger of changing R to fix a broken OS tool is that the change may break on other people's tools -- better to fix the tool.> Switching from a separator of ':' to a separator of ',' fixes the problem. > > 76,77c76,77 > < @$(SED) -e "s:@rhome:$(rhome):" -e "s:@rincludedir:$(rincludedir):" \ > < -e 's:@libsprivate:$(STATIC_LIBR_PC):' \ > --- >> @$(SED) -e "s, at rhome,$(rhome)," -e "s, at rincludedir,$(rincludedir)," \ >> -e 's, at libsprivate,$(STATIC_LIBR_PC),' \-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
Sorry, typo.
Yes, it is confusing sed. And, yes, I am also using /usr/xpg4/bin/sed. Here
is the error:
bash-3.00# make install
installing doc ...
../tools/install-sh -c -m 644 ../NEWS
"/home/dev/scratch/bbownes/R/lib/R/doc"
installing doc/html ...
installing doc/html/search ...
installing doc/manual ...
installing etc ...
installing share ...
cc -I. -I../../src/include -I../../src/include -I/usr/local/include
-DHAVE_CONFIG_H -g
-DR_HOME=3D'"/home/dev/scratch/bbownes/R/lib/R"' -o
Rscript \
./Rscript.c
sed: command garbled: s:@libsprivate:-L/home/dev/scratch/bbownes/R/lib/R/lib
-lRblas
-R/home/dev/forte/10.0/SUNWspro/lib/v8plus:/home/dev/forte/10.0/SUNWspro/lib:/opt/SUNWspro/lib/v8plus:/opt/SUNWspro/lib
-L/home/dev/forte/10.0/SUNWspro/lib/v8plus
-L/home/dev/forte/10.0/SUNWspro/prod/lib/v8plus
-L/home/dev/forte/10.0/SUNWspro/lib -L/home/dev/forte/10.0/SUNWspro/prod/lib
-L/usr/ccs/lib -lfui -lfai -lfai2 -lfsumai -lfprodai -lfminlai -lfmaxlai
-lfminvai -lfmaxvai -lfsu -lsunmath -lmtsk -lm -lnsl -lsocket -ldl -lm
-licuuc -licui18n:
*** Error code 2
The following command caused the error:
/usr/xpg4/bin/sed -e "s:@rhome:/home/dev/scratch/bbownes/R/lib/R:" -e
"s:@rincludedir:/home/dev/scratch/bbownes/R/lib/R/include:" \
-e 's:@libsprivate:-L/home/dev/scratch/bbownes/R/lib/R/lib -lRblas
-R/home/dev/forte/10.0/SUNWspro/lib/v8plus:/home/dev/forte/10.0/SUNWspro/lib:/opt/SUNWspro/lib/v8plus:/opt/SUNWspro/lib
-L/home/dev/forte/10.0/SUNWspro/lib/v8plus
-L/home/dev/forte/10.0/SUNWspro/prod/lib/v8plus
-L/home/dev/forte/10.0/SUNWspro/lib -L/home/dev/forte/10.0/SUNWspro/prod/lib
-L/usr/ccs/lib -lfui -lfai -lfai2 -lfsumai -lfprodai -lfminlai -lfmaxlai
-lfminvai -lfmaxvai -lfsu -lsunmath -lmtsk -lm -lnsl -lsocket -ldl -lm
-licuuc -licui18n:' \
-e 's/@VERSION/2.9.2/' ./libR.pc.in \
> "/home/dev/scratch/bbownes/R/lib/pkgconfig/libR.pc"
make: Fatal error: Command failed for target `install-pc'
Current working directory /home/dev/scratch/bbownes/R-2.9.2/src/unix
*** Error code 1
The following command caused the error:
for d in scripts include extra appl nmath unix main modules library; do \
(cd ${d} && make install) || exit 1; \
done
make: Fatal error: Command failed for target `install'
Current working directory /home/dev/scratch/bbownes/R-2.9.2/src
*** Error code 1
The following command caused the error:
for d in m4 tools doc etc share src tests po; do \
(cd ${d} && make install) || exit 1; \
done
make: Fatal error: Command failed for target `install'
bash-3.00#
and the configure that started it all:
./configure --with-readline=3Dno --with-iconv=3Dno --with-x=3Dno
--enable-static=3Dyes --enable-R-static-lib
--prefix=3D/home/dev/scratch/bbownes/R
On Thu, Sep 10, 2009 at 2:34 AM, Peter Dalgaard <p.dalgaard at
biostat.ku.dk>wrote:
> Prof Brian Ripley wrote:
>
>> On Thu, 10 Sep 2009, bownes at gmail.com wrote:
>>
>> Full_Name: Bob Bownes
>>> Version: 2.9.2
>>> OS: Solaris 10
>>> Submission from: (NULL) (164.55.254.106)
>>>
>>>
>>> The sed lines in src/unix/Makefile confuse the grep distributed
with
>>> Solaris
>>> that gets configured by ./configure.
>>>
>>
>> Well, it calls sed not grep! Which version was that -- it works for me
>> and for several others. I have SED =3D /usr/xpg4/bin/sed (see file
Makeconf),
>> and that is 'distributed with Solaris': perhaps you do not have
it
>> installed?
>>
>> The danger of changing R to fix a broken OS tool is that the change may
>> break on other people's tools -- better to fix the tool.
>>
>
>
> Is this a tool problem at all? The most common reason for separator
> breakage is that one of the substitution strings contains the separator.
>
> E.g., the sed line may break if @rhome contains a colon, and after the fix
> it will break if it contains a comma...
>
>
>>
>> Switching from a separator of ':' to a separator of
',' fixes the
>>> problem.
>>>
>>> 76,77c76,77
>>> < @$(SED) -e "s:@rhome:$(rhome):" -e
"s:@rincludedir:$(rincludedir):"
>>> \
>>> < -e 's:@libsprivate:$(STATIC_LIBR_PC):' \
>>> ---
>>>
>>>> @$(SED) -e "s, at rhome,$(rhome)," -e "s,
at rincludedir,$(rincludedir),"
>>>> \
>>>> -e 's, at libsprivate,$(STATIC_LIBR_PC),' \
>>>>
>>>
>>
>
> --
> O__ ---- Peter Dalgaard =D8ster Farimagsgade 5, Entr.B
> c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
> (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
> ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907
>
[[alternative HTML version deleted]]
ripley at stats.ox.ac.uk
2009-Sep-10 15:40 UTC
[Rd] 'make install' fails on Solaris (PR#13946)
This message is in MIME format. The first part should be readable text, while the remaining parts are likely unreadable without MIME-aware tools. --27464147-1085614336-1252597171=:13955 Content-Type: TEXT/PLAIN; charset=ISO-8859-1; format=flowed Content-Transfer-Encoding: 8BIT I can see what has happened: one of the paths contains : as Peter suggested. By not why, and there seem to be more wrong with it: look at the lines I've enclosed in ===. There is no space after -Rblas, and other odd things, so changing the sed script would not help here. As Peter say, -Wlfoo,bar is just as likely as : in there if things go this badly wrong. (Of course mailer may have garbled this.) I have STATIC_LIBR_PC = $(BLAS_LIBS) $(FLIBS) $(LIBINTL) -lreadline -ltermcap $(LIBS) and nothing strange in the expansion. Try not using --enable-R-static-lib. What we could do it to allow the script to fail: having libR.pc is a convenience, and --enable-R-static-lib is rarely used. On Thu, 10 Sep 2009, Bob Bownes wrote:> Sorry, typo. > > Yes, it is confusing sed. And, yes, I am also using /usr/xpg4/bin/sed. Here > is the error: > > bash-3.00# make install > installing doc ... > ../tools/install-sh -c -m 644 ../NEWS > "/home/dev/scratch/bbownes/R/lib/R/doc" > installing doc/html ... > installing doc/html/search ... > installing doc/manual ... > installing etc ... > installing share ... > cc -I. -I../../src/include -I../../src/include? -I/usr/local/include > -DHAVE_CONFIG_H?? -g -DR_HOME='"/home/dev/scratch/bbownes/R/lib/R"' -o > Rscript \ > ? ./Rscript.c > sed: command garbled: s:@libsprivate:-L/home/dev/scratch/bbownes/R/lib/R/lib==========> -lRblas-R/home/dev/forte/10.0/SUNWspro/lib/v8plus:/home/dev/forte/10.0/SUNWspro/li> b:/opt/SUNWspro/lib/v8plus:/opt/SUNWspro/lib==========> -L/home/dev/forte/10.0/SUNWspro/lib/v8plus> -L/home/dev/forte/10.0/SUNWspro/prod/lib/v8plus > -L/home/dev/forte/10.0/SUNWspro/lib -L/home/dev/forte/10.0/SUNWspro/prod/lib > -L/usr/ccs/lib -lfui -lfai -lfai2 -lfsumai -lfprodai -lfminlai -lfmaxlai > -lfminvai -lfmaxvai -lfsu -lsunmath -lmtsk -lm??? -lnsl -lsocket -ldl -lm > -licuuc -licui18n: > *** Error code 2 > The following command caused the error: > /usr/xpg4/bin/sed -e "s:@rhome:/home/dev/scratch/bbownes/R/lib/R:" -e > "s:@rincludedir:/home/dev/scratch/bbownes/R/lib/R/include:" \ > ? -e 's:@libsprivate:-L/home/dev/scratch/bbownes/R/lib/R/lib -lRblas-R/home/dev/forte/10.0/SUNWspro/lib/v8plus:/home/dev/forte/10.0/SUNWspro/li > b:/opt/SUNWspro/lib/v8plus:/opt/SUNWspro/lib > -L/home/dev/forte/10.0/SUNWspro/lib/v8plus > -L/home/dev/forte/10.0/SUNWspro/prod/lib/v8plus > -L/home/dev/forte/10.0/SUNWspro/lib -L/home/dev/forte/10.0/SUNWspro/prod/lib > -L/usr/ccs/lib -lfui -lfai -lfai2 -lfsumai -lfprodai -lfminlai -lfmaxlai > -lfminvai -lfmaxvai -lfsu -lsunmath -lmtsk -lm??? -lnsl -lsocket -ldl -lm > -licuuc -licui18n:' \ > ? -e 's/@VERSION/2.9.2/' ./libR.pc.in \ > ? > "/home/dev/scratch/bbownes/R/lib/pkgconfig/libR.pc" > make: Fatal error: Command failed for target `install-pc' > Current working directory /home/dev/scratch/bbownes/R-2.9.2/src/unix > *** Error code 1 > The following command caused the error: > for d in scripts include extra appl nmath unix main modules library; do \ > ? (cd ${d} && make install) || exit 1; \ > done > make: Fatal error: Command failed for target `install' > Current working directory /home/dev/scratch/bbownes/R-2.9.2/src > *** Error code 1 > The following command caused the error: > for d in m4 tools doc etc share src tests? po; do \ > ? (cd ${d} && make install) || exit 1; \ > done > make: Fatal error: Command failed for target `install' > bash-3.00# > > and the configure that started it all: > ./configure --with-readline=no --with-iconv=no --with-x=no > --enable-static=yes --enable-R-static-lib > --prefix=/home/dev/scratch/bbownes/R > > > > > On Thu, Sep 10, 2009 at 2:34 AM, Peter Dalgaard <p.dalgaard at biostat.ku.dk> > wrote: > Prof Brian Ripley wrote: > On Thu, 10 Sep 2009, bownes at gmail.com wrote: > > Full_Name: Bob Bownes > Version: 2.9.2 > OS: Solaris 10 > Submission from: (NULL) (164.55.254.106) > > > The sed lines in src/unix/Makefile > confuse the grep distributed with > Solaris > that gets configured by ./configure. > > > Well, it calls sed not grep! ?Which version was that > -- it works for me and for several others. ?I have > SED = /usr/xpg4/bin/sed (see file Makeconf), and > that is 'distributed with Solaris': perhaps you do > not have it installed? > > The danger of changing R to fix a broken OS tool is > that the change may break on other people's tools -- > better to fix the tool. > > > > Is this a tool problem at all? The most common reason for separator > breakage is that one of the substitution strings contains the > separator. > > E.g., the sed line may break if ?@rhome contains a colon, and after > the fix it will break if it contains a comma... > > > > Switching from a separator of ':' to a > separator of ',' fixes the problem. > > 76,77c76,77 > < ? ? ? @$(SED) -e "s:@rhome:$(rhome):" -e > "s:@rincludedir:$(rincludedir):" \ > < ? ? ? ? -e > 's:@libsprivate:$(STATIC_LIBR_PC):' \ > --- > ? ? ?@$(SED) -e > "s, at rhome,$(rhome)," -e > "s, at rincludedir,$(rincludedir)," \ > ? ? ? ?-e > 's, at libsprivate,$(STATIC_LIBR_PC),' > \ > > > > > -- > ? O__ ?---- Peter Dalgaard ? ? ? ? ? ? ?ster Farimagsgade 5, Entr.B > ?c/ /'_ --- Dept. of Biostatistics ? ? PO Box 2099, 1014 Cph. K > ?(*) \(*) -- University of Copenhagen ? Denmark ? ? ?Ph: ?(+45) > 35327918 > ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) ? ? ? ? ? ? ?FAX: (+45) > 35327907 > > > >-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 --27464147-1085614336-1252597171=:13955--
Interesting. None of my paths have ':' in them. make install without --enable-R-static-lib works fine. On Thu, Sep 10, 2009 at 11:39 AM, Prof Brian Ripley <ripley at stats.ox.ac.uk>wrote:> I can see what has happened: one of the paths contains : as Peter > suggested. By not why, and there seem to be more wrong with it: look at the > lines I've enclosed in =3D=3D=3D. There is no space after -Rblas, and other odd > things, so changing the sed script would not help here. > As Peter say, -Wlfoo,bar is just as likely as : in there if things go this > badly wrong. (Of course mailer may have garbled this.) > > I have > > STATIC_LIBR_PC =3D $(BLAS_LIBS) $(FLIBS) $(LIBINTL) -lreadline -ltermcap > $(LIBS) > > and nothing strange in the expansion. > > Try not using --enable-R-static-lib. > > What we could do it to allow the script to fail: having libR.pc is a > convenience, and --enable-R-static-lib is rarely used. > > > > On Thu, 10 Sep 2009, Bob Bownes wrote: > > Sorry, typo. >> >> Yes, it is confusing sed. And, yes, I am also using /usr/xpg4/bin/sed. >> Here >> is the error: >> >> bash-3.00# make install >> installing doc ... >> ../tools/install-sh -c -m 644 ../NEWS >> "/home/dev/scratch/bbownes/R/lib/R/doc" >> installing doc/html ... >> installing doc/html/search ... >> installing doc/manual ... >> installing etc ... >> installing share ... >> cc -I. -I../../src/include -I../../src/include -I/usr/local/include >> -DHAVE_CONFIG_H -g -DR_HOME=3D'"/home/dev/scratch/bbownes/R/lib/R"' -o >> Rscript \ >> ./Rscript.c >> sed: command garbled: s:@libsprivate >> :-L/home/dev/scratch/bbownes/R/lib/R/lib >> > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > >> >> -lRblas-R/home/dev/forte/10.0/SUNWspro/lib/v8plus:/home/dev/forte/10.0/SUNWspro/li >> b:/opt/SUNWspro/lib/v8plus:/opt/SUNWspro/lib >> > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > >> -L/home/dev/forte/10.0/SUNWspro/lib/v8plus >> -L/home/dev/forte/10.0/SUNWspro/prod/lib/v8plus >> -L/home/dev/forte/10.0/SUNWspro/lib >> -L/home/dev/forte/10.0/SUNWspro/prod/lib >> -L/usr/ccs/lib -lfui -lfai -lfai2 -lfsumai -lfprodai -lfminlai -lfmaxlai >> -lfminvai -lfmaxvai -lfsu -lsunmath -lmtsk -lm -lnsl -lsocket -ldl -lm >> -licuuc -licui18n: >> *** Error code 2 >> The following command caused the error: >> /usr/xpg4/bin/sed -e "s:@rhome:/home/dev/scratch/bbownes/R/lib/R:" -e >> "s:@rincludedir:/home/dev/scratch/bbownes/R/lib/R/include:" \ >> -e 's:@libsprivate:-L/home/dev/scratch/bbownes/R/lib/R/lib >> -lRblas-R/home/dev/forte/10.0/SUNWspro/lib/v8plus:/home/dev/forte/10.0/SUNWspro/li >> b:/opt/SUNWspro/lib/v8plus:/opt/SUNWspro/lib >> -L/home/dev/forte/10.0/SUNWspro/lib/v8plus >> -L/home/dev/forte/10.0/SUNWspro/prod/lib/v8plus >> -L/home/dev/forte/10.0/SUNWspro/lib >> -L/home/dev/forte/10.0/SUNWspro/prod/lib >> -L/usr/ccs/lib -lfui -lfai -lfai2 -lfsumai -lfprodai -lfminlai -lfmaxlai >> -lfminvai -lfmaxvai -lfsu -lsunmath -lmtsk -lm -lnsl -lsocket -ldl -lm >> -licuuc -licui18n:' \ >> -e 's/@VERSION/2.9.2/' ./libR.pc.in \ >> > "/home/dev/scratch/bbownes/R/lib/pkgconfig/libR.pc" >> make: Fatal error: Command failed for target `install-pc' >> Current working directory /home/dev/scratch/bbownes/R-2.9.2/src/unix >> *** Error code 1 >> The following command caused the error: >> for d in scripts include extra appl nmath unix main modules library; do \ >> (cd ${d} && make install) || exit 1; \ >> done >> make: Fatal error: Command failed for target `install' >> Current working directory /home/dev/scratch/bbownes/R-2.9.2/src >> *** Error code 1 >> The following command caused the error: >> for d in m4 tools doc etc share src tests po; do \ >> (cd ${d} && make install) || exit 1; \ >> done >> make: Fatal error: Command failed for target `install' >> bash-3.00# >> >> and the configure that started it all: >> ./configure --with-readline=3Dno --with-iconv=3Dno --with-x=3Dno >> --enable-static=3Dyes --enable-R-static-lib >> --prefix=3D/home/dev/scratch/bbownes/R >> >> >> >> >> On Thu, Sep 10, 2009 at 2:34 AM, Peter Dalgaard <p.dalgaard at biostat.ku.dk >> > >> wrote: >> Prof Brian Ripley wrote: >> On Thu, 10 Sep 2009, bownes at gmail.com wrote: >> >> Full_Name: Bob Bownes >> Version: 2.9.2 >> OS: Solaris 10 >> Submission from: (NULL) (164.55.254.106) >> >> >> The sed lines in src/unix/Makefile >> confuse the grep distributed with >> Solaris >> that gets configured by ./configure. >> >> >> Well, it calls sed not grep! Which version was that >> -- it works for me and for several others. I have >> SED =3D /usr/xpg4/bin/sed (see file Makeconf), and >> that is 'distributed with Solaris': perhaps you do >> not have it installed? >> >> The danger of changing R to fix a broken OS tool is >> that the change may break on other people's tools -- >> better to fix the tool. >> >> >> >> Is this a tool problem at all? The most common reason for separator >> breakage is that one of the substitution strings contains the >> separator. >> >> E.g., the sed line may break if @rhome contains a colon, and after >> the fix it will break if it contains a comma... >> >> >> >> Switching from a separator of ':' to a >> separator of ',' fixes the problem. >> >> 76,77c76,77 >> < @$(SED) -e "s:@rhome:$(rhome):" -e >> "s:@rincludedir:$(rincludedir):" \ >> < -e >> 's:@libsprivate:$(STATIC_LIBR_PC):' \ >> --- >> @$(SED) -e >> "s, at rhome,$(rhome)," -e >> "s, at rincludedir,$(rincludedir)," \ >> -e >> 's, at libsprivate,$(STATIC_LIBR_PC),' >> \ >> >> >> >> >> -- >> O__ ---- Peter Dalgaard =D8ster Farimagsgade 5, Entr.B >> c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K >> (*) \(*) -- University of Copenhagen Denmark Ph: (+45) >> 35327918 >> ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) >> 35327907 >> >> >> >> >> > -- > Brian D. Ripley, ripley at stats.ox.ac.uk > Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/<http://www.stats.ox.ac.uk/%7Eripley/> > University of Oxford, Tel: +44 1865 272861 (self) > 1 South Parks Road, +44 1865 272866 (PA) > Oxford OX1 3TG, UK Fax: +44 1865 272595 >[[alternative HTML version deleted]]