similar to: linking to external C++ library

Hi, Recently, I made an R package that used the C++ library Boost.Thread (http://www.boost.org/doc/libs/1_54_0/doc/html/thread.html) for multithreading. Previously, I have posted a question at stackoverflow (http://stackoverflow.com/questions/19651954/is-it-possible-to-build-an-r-package-which-use-rcpp-and-boost-thread-on-http), and I also asked at rcpp-devel

I have been RTFM/doc/www, but I'm still lost. How does one tell R CMD INSTALL and R CMD check (both) that libraries are installed in non-usual places and so -I/APPS/include (or whatever) is necessary in CPPFLAGS and -L/APPS/lib (similarly) is necessary in LDFLAGS? I know I can hardwire them in pkg/src/Makevars, but this requires hand editing of that file by each installer (yuck!) rgentlem

I have been RTFM/doc/www, but I'm still lost. How does one tell R CMD INSTALL and R CMD check (both) that libraries are installed in non-usual places and so -I/APPS/include (or whatever) is necessary in CPPFLAGS and -L/APPS/lib (similarly) is necessary in LDFLAGS? I know I can hardwire them in pkg/src/Makevars, but this requires hand editing of that file by each installer (yuck!) rgentlem

Dear R experts, recently I started developing a Rcpp package "OpenMPTest". Within that package I want to use OpenMP, as in the following code example: // header file #include <omp.h> using namespace Rcpp ; RcppExport SEXP testOpenMP( SEXP nThreads ) ; // cpp file SEXP testOpenMP( SEXP nThreads ) { BEGIN_RCPP NumericVector numberThreads = NumericVector( nThreads );

I am having trouble installing RMySQL on a clean install of Fedora Core 4 64 bit on a dual dual core machine (that is, two dual core processors). Seems like the LD_LIBRARY_PATH is incorrect, but I don't seem to have it quite right yet. There are a few mentions of this problem in google, but thus far none of the "fixes" and fixed my problem. I've tried defining the

HI! Have somebody an expample how the syntax is for passing the path of include files to: "If a package needs to specify additional directories for search- ing header les (`-I' options) or additional libraries for linking (`-l' and `-L' options), it should do this by setting the variables PKG_CPPFLAGS and PKG_LIBS in `src/Makevars'." But no examples. :-( src/Makevars.

Hallo! Thanks for the answers that I received. I had downloaded the last distribution of RMySQL from /R/CRAN/src/contrib/Devel.. Its the first package that I am trying to compile under Windows. >From the Compiler I am getting the following error message. In file included from RMySQL.c:1: RMySQL.h:24: mysql.h: No such file or directory RMySQL.h:25: mysql_com.h: No such file or directory

in download and automatic install the RMySQL, R show the error (look under session attach. MySQL is install and operational. Juan Santiago Ramseyer. > install.packages('RMySQL') --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done tentando a URL 'http://cran.br.r-project.org/src/contrib/RMySQL_0.5-7.tar.gz' Content type

Full_Name: Ankhee Dutta Version: 2.3 OS: LINUX Submission from: (NULL) (202.141.12.97) I have a linux system of Mandriva-2007 with R version 2.3.0 and MySQL with 5.0.0. I have also got DBI-R database interface version-0.1-11 installed on my Linux system.While installing RMySQL package version 0.5-11 i am facing problem . while installation the error report which is coming is as follows:

Hello All, I have a technical difficulty installing RMySQL. I am running openSUSE11.1 and R 2.12 I have installed MySQL from the website. and following installation , as root This is the part where trouble begin, ...... checking mysql.h usability... no checking mysql.h presence... no checking for mysql.h... no checking for mysql_init in -lmysqlclient... no checking for mysql_init in

Thanks again everyone, I have a problem trying to install RMySQL on Suse 10.0. I have used both the install.packages() and the 'R CMD INSTALL RMySQL..." neither worked. I get the error message telling me that it cannot find mysql. So I have set the flags using export PKG_CPPFLAGS="-I</usr/bin/>" export PKG_LIBS="-L</usr/lib/mysql>" After that I run R

Hi I run suse linux 9.1 and I installed MySQL server, client, devel, bench. DBI is installed, when I try to install RMySQL I get an error saying, that libz is missing. (paths to libs were set:export PKG_CPPFLAGS="-I/usr/include/mysql/" export PKG_LIBS="-L/usr/lib/mysql/ -lmysqlclient") so my question: where do I get the libz files (are these mysql files? if yes, why were

When I install an R package with cpp codes such as rrcov via CRAN (under R 3.1.1, using no Makevars file and under Ubuntu 14.04 using GCC 4.8), the cpp code is compiled with the -o3 flag (in fact, looking at the Makeconf file this seem to again be the default since R 3.1.1) But when I install my own package via CRAN it is compiled with the -o2 flag. My questions are what is causing my

Hi, All I have a linux system of Mandriva-2007 with R version 2.3.0 and MySQL with 5.0.0. I have also got DBI-R database interface version-0.1-11 installed on my Linux system.While installing RMySQL package version 0.5-11 but facing the problem mentioned below . * Installing *source* package 'RMySQL' ... creating cache ./config.cache checking how to run the C preprocessor... cc -E

Hello, I'm writing an R package that is mainly written in C++. By default, R CMD INSTALL creates C/C++ flags as follows: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g However, my package is fairly large. With debug info compiled into the library, the generated .so file is over 200MB. Without debug info, it's about 30MB. I hope

Hi, I have written a small C++ function and compile it. However in R I can't see the function I have defined in C++. I have read some web-pages about Rcpp and C++ but it is a bit confusion for me. Anyway, This is the C++-code: #include <Rcpp.h> using namespace Rcpp; // [[Rcpp::export]] List compute_values_cpp(int totalPoints = 1e5, double angle_increment = 0.01, int radius =

Full_Name: Rick Sayre Version: 2.4.0 OS: Windows Submission from: (NULL) (138.72.27.164) PKG_LIBS works fine on *nix on windows, it seems to be ignored by the "SHLIB" script so, R CMD SHLIB blah properly uses PKG_CPPFLAGS and PKG_CFLAGS from Makevars, but PKG_LIBS is ignored

Hi. I am writing some code in C that I would like to link into R. My Makevars file is: PKG_CPPFLAGS=-I/usr/local/include PKG_LIBS=-L/usr/local/lib -lgsl PKG_CFLAGS = -Wall -O0 -g -p -pg The source file is core.c,. and I am compiling using R CMD SHLIB core.c The output is gcc -arch x86_64 -O3 -g -p -std=gnu99 -I/Library/Frameworks/ R.framework/Resources/include

Dirk, thank you a thousand times. Indeed, src/Makevars was wrong. I modified Makevars so that now looks like the below and the package now compiled and linked properly. CXX_STD = CXX11 PKG_LIBS += $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(shell ${R_HOME}/bin/Rscript -e "RcppParallel::RcppParallelLibs()") PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -I../inst/include

Hi R Users, I am new to running R on a Linux platform (I'm used to Windows) - I'm running R 2.7.0 on Ubuntu 7.10 (Gutsy) as sudo (without Emacs). My architecture is Pentium D (x86_64). I am having problems successsfully configuring the downloaded package 'udunits'. When I execute > install.packages("udunits", lib="/usr/local/lib/R/library") I get the