search for: xlic_lib

...ages(). I got an error for splancs and sgeostat. Trying to install them 'manually' with R CMD INSTALL, I got the following errors. 1) for splancs: Tue<15:26>library[82]#R CMD INSTALL splancs_2.01-5.tar.gz Installing *source* package `splancs' ... libs f95 -PIC -xO5 -dalign -xlic_lib=sunperf -c areapl.f -o areapl.o f95 -PIC -xO5 -dalign -xlic_lib=sunperf -c cncvwt.f -o cncvwt.o f95 -PIC -xO5 -dalign -xlic_lib=sunperf -c dokhat.f -o dokhat.o f95 -PIC -xO5 -dalign -xlic_lib=sunperf -c inpip.f -o inpip.o f95 -PIC -xO5 -dalign -xlic_lib=sunperf -c ipippa.f -o ipippa.o f...

...unperf causes drastic performance hits on some simple benchmarks I've tried (e.g. matrix multiplication can take up to 100 times as long for a sufficiently large matrix (n=5000)) Solution: -------- Configure script should use the recommended flag for inclusion of the Sun Performance Library: -xlic_lib=sunperf (ironically, the configure script sets this flag up if the sgemm sunperf test passes!). Quick fix: Add the recommended flag to the compiler env vars Description: ----------- I'm setting the following env vars before running configure, as per the admin guide: export PATH=/usr/ccs/bin...

...penSolaris and need to pass some options to configure. Tried the 3 recommended ways of doing it and nothing works, configure cannot find the headers and the libs. I ran configure manually and that worked fine ./configure CC=cc CFLAGS="-dalign -KPIC -xlic_lib=sunperf" LDFLAGS="-L/usr/sfw/lib -L/usr/lib -L/usr/local/lib -L/opt/csw/lib" CPPFLAGS="-I/usr/local/lib/R/include -I/usr/mysql/5.0/include/mysql -I/opt/csw/include -I/usr/sfw/include -I/usr/X11/include -I/usr/lib/gtk-2.0/include...

...dated my OS from Solaris 2.7 to Solaris 2.8, and I am trying to build R 1.9.1. Configure seems to run fine, resulting in the message: R is now configured for sparc-sun-solaris2.8 Source directory: . Installation directory: /usr/local C compiler: cc -xO5 -dalign -xlic_lib=sunperf C++ compiler: CC -xO5 -dalign Fortran compiler: f95 -xO5 -dalign -xlic_lib=sunperf Interfaces supported: X11 External libraries: BLAS(none), LAPACK(in blas) Additional capabilities: PNG, JPEG Options enabled: R profiling Recomm...

...arch=v8plusa" CFLAGS="-xO3 -dalign" F77="f90 -xarch=v8plusa" FFLAGS="-xO3 -dalign" MAIN_LDFLAGS="-xarch=v8plusa" LDFLAGS="-L/opt/SUNWspro/lib -L/usr/local/lib" CXX="CC -xarch=v8plusa" CXXFLAGS="-xO3 -dalign" BLAS_LIBS="-xlic_lib=sunperf" LAPACK_LIBS="-xlic_lib=sunperf" The configure and make steps finished apparently normally, but "make check" failed. I found that R would start, and do elementary things, but anything involving linear algebra failed: for example, I tried the "lm-tests.R&quot...

...o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o random.o regex.o relop.o saveload.o scan.o seq.o size.o sort.o source.o split.o subassign.o subscript.o subset.o summary.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -xlic_lib=sunperf -lsunmath -R/opt/SUNWspro/lib -L/opt/SUNWspro/lib -L/opt/SUNWspro/WS6U1/lib -L/usr/ccs/lib -L/usr/lib -lfui -lfai -lfai2 -lfsumai -lfprodai -lfminlai -lfmaxlai -lfminvai -lfmaxvai -lfsu -lsunmath -lm -lz -lnsl -lsocket -lreadline -ldl -ltermcap -lm -xlic_lib=sunperf Undefined...

...nstall RMySQL on OpenSolaris and need to pass some options to configure. Tried the 3 recommended ways of doing it and nothing works, configure cannot find the headers and the libs. I ran configure manually and that worked fine ./configure CC=cc CFLAGS="-dalign -KPIC -xlic_lib=sunperf" LDFLAGS="-L/usr/sfw/lib -L/usr/lib -L/usr/local/lib -L/opt/csw/lib" CPPFLAGS="-I/usr/local/lib/R/include -I/usr/mysql/5.0/include/mysql -I/opt/csw/include -I/usr/sfw/include -I/usr/X11/include -I/usr/lib/gtk-2.0/include...

...O5 -xlibmil -dalign" CXX="CC -xarch=v8plusa" CXXFLAGS="-xO5 -xlibmil -dalign" Actually, there is one thing that I didn't specify above, but I'm not sure how. The Sun Performance library is a BLAS library. In LAPACK, you specify it as BLASLIB ="-xlic_lib=sunperf" Is there a simple way to specify that in config.site? Anyways, that's probably not the problem that I'm having, but if you have any advice... Here's the real problem, make fails at: MAKE="make" R_LIBS= ../../../bin/R CMD INSTALL -l ../../../library foreign.tgz...

...- is that the problem?). This is how I compile the file with the functions I want to call from R: cd /export/home/gpetris/ R SHLIB tryit.c cc -I/export/home/share/R/R-1.4.0/lib/R/include "-I/export/home/gpetris/C" -I/usr/local/include -I/export/home/share/include -KPIC -xO5 -dalign -xlic_lib=sunperf -c tryit.c -o tryit.o cc -G -o tryit.so tryit.o "-L/export/home/gpetris/lib/SUN/32bit -lutil -lrand" -L/usr/local/lib -L/export/home/share/lib Compilation finished at Fri Jan 18 12:45:20 So far, so good. But when I dyn.load it in R: > dyn.load("tryit.so") Error...

...c.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm ld: fatal: file bsplvd.o: wrong ELF class: ELFCLASS32 ld: fatal: File processing errors. No output written...

...PERSIZE=letter CC="cc -xarch=v8plusa" CFLAGS="-xO3 -dalign" F77="f90 -xarch=v8plusa" FFLAGS="-xO3 -dalign" MAIN_LDFLAGS="-xarch=v8plusa" LDFLAGS=-L/opt/SUNWspro/lib CXX="CC -xarch=v8plusa" CXXFLAGS="-xO3 -dalign" BLAS_LIBS="-xlic_lib=sunperf" LAPACK_LIBS="-xlic_lib=sunperf" The configure step finished apparently OK. Then the make step failed; here are the last few lines of the screen log: CDIR$ NEXT SCALAR ^ cf90-801 f90comp: WARNING DTGEVC, File = dlapack3.f, Line = 21520,...

Dear All, I am building R-1.3.1 on Solaris 2.7 and I am trying to use the native SUNperf BLAS/LAPACK. I have added the flags ("-dalign -xlic_lib=sunperf") for the compilers in the config.site file. What is not clear to me is what I have to do with the "--with-blas" flag for ./configure. It seems to me that omitting it is not enough. Any suggestions? Another question, I guess about how to organize directories and get rid o...

...xport F77="f95 -xtarget=native64" export CXXFLAGS=-O export FFLAGS="-O4 -xlibmopt -libmil -xvector=lib -fround=nearest" export FCFLAGS=$FFLAGS export LDFLAGS="-L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9" export SHLIB_CXXLDFLAGS="-G -lCstd" export BLAS_LIBS=-xlic_lib=sunperf export LIBS="-lmvec" export SHLIB_CFLAGS=-lmvec and: ./configure --prefix=/opt/R-2.8.1 --enable-threads=solaris --with-blas Could you please help me to pinpoint the problem. Thanks -- Mohammad

...configure' and then 'make' in building R-1.4.0 from source, results in the following (short summary list) of compiling flags: BLAS = blas.o BLAS_LIBS = CC = cc CFLAGS = -g FC = f77 FFLAGS = -g Following suggestions given in R-admin.html, I also build R-1.4.0 with: BLAS = BLAS_LIBS = -xlic_lib=sunperf -lsunmath CC = cc -xarch=v9 CFLAGS = -xO5 -xlibmil -dalign FC = f95 -xarch=v9 FFLAGS = -xO5 -xlibmil -dalign I did few tests comparing the speed of these two builds. In short, I saw about 65% speed improvement for general use, slightly more for regression problems (2-3 times), and conside...

...ls.o qsort.o random.o regex.o registration.o relop.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -xlic_lib=sunperf -lsunmath -Rreg -R/opt/SUNWspro/lib/sse2:/opt/SUNWspro/lib -L/opt/SUNWspro/lib/sse2 -L/opt/SUNWspro/prod/lib/sse2 -L/opt/SUNWspro/prod/lib -L/usr/ccs/lib -lfui -lfai -lfsu -lsunmath -lmtsk -lm ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a ../extra/intl/libintl.a -lre...

...nt to be as free software-friendly as possible with /opt/sfw/bin in your PATH: CONFIG_SHELL=/usr/xpg4/bin/sh CC=cc GCC= CFLAGS=-xlibmil -dalign CXX=CC CXXFLAGS=-xlibmil -dalign F77=f95 F95=f95 FFLAGS=-xlibmil -dalign CPP=/opt/sfw/bin/cpp CPPFLAGS=-I/opt/sfw/include LDFLAGS=-L/opt/sfw/lib BLAS_LIBS=-xlic_lib=sunperf #5. configure, make and install configure --with-blas --with-lapack gmake gmake install cd src/library/Recommended R CMD INSTALL foreign_0.8-15.tar.gz #6. I also asked on R-help about how to install a bunch of packages at once. There were some interesting tips. But, the easiest way that...

...ew comments which may be helpful to other users: 1) It seems that to use C++ code (e.g. package Matrix) you now need to add -lCstd to SHLIB_CXXLDFLAGS. We will look into making configure do that automatically. 2) To get libsunperf recognized under v9 (64-bit) options you need --with-blas="-xlic_lib=sunperf": this is already in the configure script for R-devel. 3) libsunperf now seems to have the LAPACK entry points which were missing, and works well under 32-bit builds providing both BLAS and LAPACK, although it does send the occasional error message to stderr. *However* it has gone...

...wrong ELF class: ELFCLASS64 ld: fatal: File processing errors. No output written to conftest configure:54446: $? = 1 I'm compiling this 64-bit, but my CFLAGS variable is gone. It should be: CFLAGS="-g -O -mt -m64 -xarch=sparcvis -xcode=pic32 -xpagesize=4m -xbuiltin -xlibmil -xlibmopt -xlic_lib=sunperf" I could see it earlier in the log during some of the tests, but it seems to have disappeared. Is this a bug? Is there a fix or a way to work around this? Also, unrelated to my problem, I'm getting this warning: checking netinet/ip.h usability... no checking netinet/ip.h pre...

...penSolaris and need to pass some options       to configure.       Tried the 3 recommended ways of doing it and nothing works, configure    cannot       find the headers and the libs.       I ran configure manually and that worked fine       ./configure    CC=cc    CFLAGS="-dalign    -KPIC    -xlic_lib=sunperf"       LDFLAGS="-L/usr/sfw/lib  -L/usr/lib  -L/usr/local/lib  -L/opt/csw/lib"       CPPFLAGS="-I/usr/local/lib/R/include    -I/usr/mysql/5.0/include/mysql       -I/opt/csw/include        -I/usr/sfw/include        -I/usr/X11/include       -I/usr/lib/gtk-2.0/include       ...