R devel - Mar 2009 - Compiling R-2.8.1 on Sparc Solaris 10: libRlapack.so: symbol __vlog_: referenced symbol not found

Hi,

I am compiling R2.8.1 on a Sun M4000 machine with Solaris 10.
I am using Sun Studio 12.
I get the following error:

cc -xtarget=native64 -G -L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9 -o 
grDevices.so chull.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o
mkdir ../../../../library/grDevices/libs
Warning in solve.default(rgb) :
   unable to load shared library 
'/export/admin-home/nikser/R-2.8.1/modules//lapack.so':
   ld.so.1: R: fatal: relocation error: file 
/export/admin-home/nikser/R-2.8.1/lib/libRlapack.so: symbol __vlog_: 
referenced symbol not found
Error in solve.default(rgb) : lapack routines cannot be loaded
Error: unable to load R code in package 'grDevices'
Execution halted
*** Error code 1
The following command caused the error:
echo "tools:::makeLazyLoading(\"grDevices\")" | \
   R_DEFAULT_PACKAGES=NULL LC_ALL=C ../../../bin/R --vanilla --slave > 
/dev/null
make: Fatal error: Command failed for target `all'
Current working directory 
/export/admin-home/nikser/R-2.8.1/src/library/grDevices

I set the following environment variables:

export LDFLAGS="-L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9"
export CFLAGS="-I/usr/sfw/include -I/opt/csw/include"
export R_PAPERSIZE=letter
export CC="cc -xtarget=native64"
export FC="f95 -xtarget=native64"
export CXX="CC -xtarget=native64"
export CPPFLAGS="-I/usr/sfw/include -I/opt/csw/include"
export CFLAGS="-O -xlibmieee"
export F77="f95 -xtarget=native64"
export CXXFLAGS=-O
export FFLAGS="-O4 -xlibmopt -libmil -xvector=lib -fround=nearest"
export FCFLAGS=$FFLAGS
export LDFLAGS="-L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9"
export SHLIB_CXXLDFLAGS="-G -lCstd"
export BLAS_LIBS=-xlic_lib=sunperf
export LIBS="-lmvec"
export SHLIB_CFLAGS=-lmvec

and:

./configure --prefix=/opt/R-2.8.1 --enable-threads=solaris --with-blas

Could you please help me to pinpoint the problem.

Thanks
--
Mohammad

Please try the options recommended in the R-admin manual: these do not 
include using sunperf.

But if you want to choose your own options, ask your local Solaris 
help as this is not an R issue.

On Wed, 11 Mar 2009, Mohammad Nikseresht wrote:
> Hi,
>
> I am compiling R2.8.1 on a Sun M4000 machine with Solaris 10.
> I am using Sun Studio 12.
> I get the following error:
>
> cc -xtarget=native64 -G -L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9 -o 
> grDevices.so chull.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o
> mkdir ../../../../library/grDevices/libs
> Warning in solve.default(rgb) :
>  unable to load shared library 
> '/export/admin-home/nikser/R-2.8.1/modules//lapack.so':
>  ld.so.1: R: fatal: relocation error: file 
> /export/admin-home/nikser/R-2.8.1/lib/libRlapack.so: symbol __vlog_: 
> referenced symbol not found
> Error in solve.default(rgb) : lapack routines cannot be loaded
> Error: unable to load R code in package 'grDevices'
> Execution halted
> *** Error code 1
> The following command caused the error:
> echo "tools:::makeLazyLoading(\"grDevices\")" | \
>  R_DEFAULT_PACKAGES=NULL LC_ALL=C ../../../bin/R --vanilla --slave > 
> /dev/null
> make: Fatal error: Command failed for target `all'
> Current working directory 
> /export/admin-home/nikser/R-2.8.1/src/library/grDevices
>
> I set the following environment variables:
>
> export LDFLAGS="-L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9"
> export CFLAGS="-I/usr/sfw/include -I/opt/csw/include"
> export R_PAPERSIZE=letter
> export CC="cc -xtarget=native64"
> export FC="f95 -xtarget=native64"
> export CXX="CC -xtarget=native64"
> export CPPFLAGS="-I/usr/sfw/include -I/opt/csw/include"
> export CFLAGS="-O -xlibmieee"
> export F77="f95 -xtarget=native64"
> export CXXFLAGS=-O
> export FFLAGS="-O4 -xlibmopt -libmil -xvector=lib
-fround=nearest"
> export FCFLAGS=$FFLAGS
> export LDFLAGS="-L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9"
> export SHLIB_CXXLDFLAGS="-G -lCstd"
> export BLAS_LIBS=-xlic_lib=sunperf
> export LIBS="-lmvec"
> export SHLIB_CFLAGS=-lmvec
>
> and:
>
> ./configure --prefix=/opt/R-2.8.1 --enable-threads=solaris --with-blas
>
> Could you please help me to pinpoint the problem.
>
> Thanks
> --
> Mohammad
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595