Displaying 20 results from an estimated 130 matches for "uriarte".
2000 Sep 02
4
colors for background and plotting area
...e color of the plot region
(i.e., the area bounded by the axes) to be different from the margin area
(i.e., the area of the figure not within the axes region). I can use "bg" but
that changes the background of everything? How can I accomplish what I want?
Thanks,
Ramon
--
Ramón Díaz-Uriarte
Triana 47
28016 Madrid
Spain
email:ramon-diaz at teleline.es
Phone: +-34-917-730-620
+-34-657-186-407
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", &q...
2008 Feb 29
1
using zlib (was compress data on read, decompress on write)
...pression.
>
> Otherwise, R does have internal facilities to do internal (gzip)
> compression and decompression (e.g. see the end of
> src/main/connections.c), and you could make creative use of serialization
> to do the compression.
>
>
> On Thu, 28 Feb 2008, Ramon Diaz-Uriarte wrote:
>
> > Dear All,
> >
> > I'd like to be able to have R store (in a list component) a compressed
> > data set, and then write it out uncompressed. gzcon and gzfile work in
> > exactly the opposite direction. What would be a good way to handle
> >...
2008 Feb 28
2
compress data on read, decompress on write
...s one way to do it is to have C deal with the compression and
uncompression (e.g., using zlib or the bzip2 libraries) and then use
readBin, etc, from R. But, if I can, I'd like to avoid our C code
having to call zlib, etc, so as to make our package easily portable.
Thanks,
R.
--
Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
2007 Jan 05
5
eval(parse(text vs. get when accessing a function
...f.", fpost, sep = ""))
calledf(x)
## do more stuff
}
Two questions:
1) Why is the second better?
2) By changing g or h I could use "do.call" instead; why would that be better?
Because I can handle differences in argument lists?
Thanks,
R.
--
Ram?n D?az-Uriarte
Centro Nacional de Investigaciones Oncol?gicas (CNIO)
(Spanish National Cancer Center)
Melchor Fern?ndez Almagro, 3
28029 Madrid (Spain)
Fax: +-34-91-224-6972
Phone: +-34-91-224-6900
http://ligarto.org/rdiaz
PGP KeyID: 0xE89B3462
(http://ligarto.org/rdiaz/0xE89B3462.asc)
**NOTA DE CONFIDENCIALI...
2015 Dec 30
2
URW Fonts Description in Installation and Administration Manual
...t - collection of urwid widgets
ramon at Bufo:~$
shows two possibly relevant packages.
(Maybe this is a Ubuntu/Debian difference? I think Dirk has some machines
running Ubuntu).
Best,
R.
>
> Both packages list URW fonts promimently in their Description:
>
> Dirk
--
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid
Arzobispo Morcillo, 4
28029 Madrid
Spain
Phone: +34-91-497-2412
Email: rdiaz02 at gmail.com
ramon.diaz at iib.uam.es
http://ligarto.org/rdiaz
2016 Mar 22
1
bzlib, pcre and zlib still needed in rules?
...277 to 279)
--with-system-bzlib \
--with-system-pcre \
--with-system-zlib \
I wonder if these are still necessary and, in fact, when building R alpha
(specifically, R-alpha_2016-03-21_r70361.tar.gz) I get a warning saying
that those options are not recognized.
Best,
R.
--
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid
Arzobispo Morcillo, 4
28029 Madrid
Spain
Phone: +34-91-497-2412
Email: rdiaz02 at gmail.com
ramon.diaz at iib.uam.es
http://ligarto.org/rdiaz
2023 Dec 31
1
custom built R will not change BLAS/LAPACK with update-alternatives
On 30 December 2023 at 23:49, Ramon Diaz-Uriarte wrote:
| All is good. (Just for the sake of curiosity, and if you have the time: why did you find those incantations suspicious?)
Memory is fuzzy and no ECC in my wetware :) but as I seem to recall it had
to do with my fears over filenames not being standardized enough / this
interfering with the...
2000 Feb 08
7
demo(dyn.load) error in R 0.99.0
I noticed this error in my demo from previous versions as well as
R 0.99.0. Is there a way around this one also? Thanks in advance...
> demo(dyn.load)
demo(dyn.load)
---- ~~~~~~~~
Type <Return> to start :
> dyn.load(file.path(R.home(), "demos", "dynload", paste("zero",
.Platform$dynlib.ext, sep = "")))
Error in
2010 Mar 09
1
Computation of AIC for gls models
Dear Colleagues,
We are using the phylog.gls.fit() function from the R package "PHYLOGR" (Diaz-Uriarte R, Garland T: PHYLOGR: Functions for phylogenetically based statistical analyses. 2007. Available at [http://cran.r-project.org/web/packages/PHYLOGR/index.html]) to correct for lack of independence between data points. (In our particular case, the lack of independence is due to common ancestry, hen...
2007 Apr 07
2
Rserve and R to R communication
...ng
that and saves me from reinventing the wheel of using sockets, etc,
directly from R.
However, Simon's comment about better ways of R-to-R communication
made me wonder if this idea really makes sense. What is the catch?
Have other people tried similar approaches?
Thanks,
R.
--
Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
2003 Jan 21
2
books on categorical data analyses
...d edition of Agresti's "Categorical Data
Analysis" (my old copy of the first ed. of that wonderful book is falling
apart). I would appreciate suggestions about other comparable books which, if
possible, have examples using R/S code (instead of SAS).
Thanks,
Ram?n
--
Ram?n D?az-Uriarte
Bioinformatics Unit
Centro Nacional de Investigaciones Oncol?gicas (CNIO)
(Spanish National Cancer Center)
Melchor Fern?ndez Almagro, 3
28029 Madrid (Spain)
http://bioinfo.cnio.es/~rdiaz
2003 Sep 16
1
simplifying randomForest(s)
...f classification error becames
larger than that of the previous model (or of the initial model). So nothing
really new. But I haven't been able to find any comments in the literature
about "simplification" of random forests.
Any suggestions/comments?
Best,
Ram?n
--
Ram?n D?az-Uriarte
Bioinformatics Unit
Centro Nacional de Investigaciones Oncol?gicas (CNIO)
(Spanish National Cancer Center)
Melchor Fern?ndez Almagro, 3
28029 Madrid (Spain)
Fax: +-34-91-224-6972
Phone: +-34-91-224-6900
http://bioinfo.cnio.es/~rdiaz
2017 Jul 03
2
/etc/R/Renviron doesn't set R_LIBS_USER anymore
...r.org/biocLite.R")
biocLite(some_packages)
I've ended up doing
.libPaths(c(the_user_home, .libPaths()))
but this does not look very friendly for new users.
Best,
R.
>
> Dirk
>
> |
> |
> | -Kirill
> |
> | > Dirk
> | >
> |
--
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid
Arzobispo Morcillo, 4
28029 Madrid
Spain
Phone: +34-91-497-2412
Email: rdiaz02 at gmail.com
ramon.diaz at iib.uam.es
http://ligarto.org/rdiaz
2000 Jun 20
2
# of users of R, and biological examples of the use of R
...people might be using R or how many
people have downloaded R, or similar (I am aware answering this question might
require divinatory powers...).
2) Have/are any of you using R in papers in the biological sciences (specially
evolutionary biology, ecology, behavior)?
Thanks,
Ramon
--
Ramón Díaz-Uriarte
Dept. Zoology and Statistics
University of Wisconsin-Madison
Madison, WI 53706-1381
email: rdiazuri at students.wisc.edu
(NOTE: starting 15-July-2000 new email:
ramon-diaz at teleline.es)
phone: 608-238-8041
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mai...
2008 May 19
1
using zlib in a package: problems in windows
...nnhl.o:nnhl.c:(.text+0x1451): more undefined references to `gzprintf' follow
collect2: ld returned 1 exit status
make[3]: *** [RJaCGH.dll] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-RJaCGH] Error 2
*** Installation of RJaCGH failed ***
--
Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
2000 Oct 12
2
works in R-1.1.1 but not in R-development; why?
...Under development (unstable)
major 1
minor 2.0
year 2000
month 10
day 10
language R
********************
--
Ramón Díaz-Uriarte
Triana 47
28016 Madrid
Spain
email:ramon-diaz@teleline.es
Phone: +-34-918-513-966
+-34-657-186-407
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", &quo...
2013 Dec 28
1
make check fails with default libblas
...h-lapack \
--enable-R-profiling \
--enable-R-shlib \
--build=x86_64-linux-gnu \
--with-tcl-config=/usr/lib/tcl8.5/tclConfig.sh \
--with-tk-config=/usr/lib/tk8.5/tkConfig.sh
make -j8
Is this a know problem? Am I doing something wrong?
Best,
R.
--
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid
Arzobispo Morcillo, 4
28029 Madrid
Spain
Phone: +34-91-497-2412
Email: rdiaz02 at gmail.com
ramon.diaz at iib.uam.es
http://ligarto.org/rdiaz
2015 Dec 31
1
URW Fonts Description in Installation and Administration Manual
On Wed, 30-12-2015, at 21:08, Dirk Eddelbuettel <edd at debian.org> wrote:
> On 30 December 2015 at 20:07, Ramon Diaz-Uriarte wrote:
> |
> |
> |
> | On Wed, 30-12-2015, at 12:44, Dirk Eddelbuettel <edd at debian.org> wrote:
> | > On 30 December 2015 at 05:00, Dario Strbenac wrote:
> | > | Good day,
> | > |
> | > | In section A.2, the manual advises "Linux users will want...
1999 Oct 23
1
greek letters and deparsing in title
...eparse(min(x))))
but I'd like beta and rho to show up as greek letters.
I have tried several combinations of "expression", "paste", "plain", and looked
at the help for legend, text, and title, but I am not able to get it to work.
Thank you,
Ramon
--
Ramon Diaz-Uriarte
Dept. Zoology and Statistics
University of Wisconsin-Madison
Madison, WI 53706
email: rdiazuri at students.wisc.edu
phone: 608-238-8041
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send &...
2008 Apr 26
1
returning vectors of unknown size from C (with .C)
...;d rather
avoid it if I can (all of the code seems working except for the return
of values into R). Another would be to write to a file from C and then
read that into R, but this looks very ugly. Are there any other
reasonable alternatives, or should I just use .Call?
Thanks,
R.
--
Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz